Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_026611.1 Length=43129 Score E Sequences producing significant alignments: (Bits) Value seq150516 343 4e-90 seq201909 170 5e-38 seq255299 107 5e-19 seq147806 89.7 1e-13 seq79056 84.2 6e-12 >seq150516 Length=8092 Score = 343 bits (380), Expect = 4e-90 Identities = 391/525 (74%), Gaps = 0/525 (0%) Strand=Plus/Minus Query 1 ATGGCAAAACCGGATTGGGAGGCCATCGAGTCGGCCTACCGAGCCGGGGTGTTAAGCCTC 60 |||||| ||| || |||||||| ||||||||||| ||||| || || || | || Sbjct 2736 ATGGCATCACCTGACTGGGAGGCTATCGAGTCGGCTTACCGGGCTGGCTTGATGTCTCTA 2677 Query 61 CGAGAGATAGCGGCGCAGCACAGCATCACAGAAGGGGCGATCAGGAAGAGAGCCAAGCGT 120 || || || || | || |||||||| | ||||| || || | || ||||| |||||| Sbjct 2676 CGTGAAATCGCCTCACAACACAGCATTAGTGAAGGCGCCATACGAAAAAGAGCAAAGCGT 2617 Query 121 GATGACTGGTCTAGGGACATCTCCGCCAAGATAAAAGAGCGTGCTGATGATCTGGTACGC 180 ||||| ||||| | ||| | |||| ||| | ||||||||||||||||||||||||||| Sbjct 2616 GATGATTGGTCGCGTGACCTTGCCGCGAAGGTGAAAGAGCGTGCTGATGATCTGGTACGC 2557 Query 181 AAAGCCGAGGTACGCAAACAGGTACGCACCGAAAACGCACTATCTGAGCGCGTACTTATT 240 ||| ||||||||||| ||||||||| | || | |||||| || || |||||||||||| Sbjct 2556 AAACAAGAGGTACGCAAGCAGGTACGCGCTGAGAGCGCACTGTCAGAACGCGTACTTATT 2497 Query 241 GAGTCCAGCGCCGAGGTGATCGCTCAGGTTCGCATGGAACACCGAGGGGATATCCGGCGG 300 || ||| ||| ||||| || || ||||| ||||| || || || |||||| |||| Sbjct 2496 GAAGCCACCGCAGAGGTCATTGCCACTGTTCGTATGGAGCATCGCGGTGATATCAAGCGG 2437 Query 301 GCTCGCGAGATAGCCAATGCGCTCTTTGATGAGCTAGCGGCAGAGTGTGCCGATGTTGAC 360 || | | || ||||||| || ||||||||||| | || |||||||| ||||||| Sbjct 2436 GCCAGGCAAATCACCAATGCTCTTTTTGATGAGCTTGGCGCTGAGTGTGCTGATGTTGCT 2377 Query 361 TCTCTCCACAAGCTTGGTGAATTGATGCTTGATCCCGACGAGAACGGCAAGGACAAGCTT 420 | || | ||| | || || |||||| | | |||||||| || || ||||| || Sbjct 2376 GCGCTGGAGAAGTTGGGCGAGTTGATGTTCAACCCCGACGATAAGGGGCAGGACCGCCTG 2317 Query 421 AACGAAATCTATCACGCGATAATCGGCATGCCTGAGCGCGTGAAGTCCATGAAGGCGCTA 480 || || || ||||| | | ||| ||||||| || ||||| ||||| | ||||| || Sbjct 2316 AATGAGATTTATCATAAGGTCATCAGCATGCCAGATCGCGTCAAGTCGGTTAAGGCACTC 2257 Query 481 AGCGAGACGCTGAAAAACCTGATTGGTCTGGAGCGGGAGGCGTAC 525 ||||| ||||||||||||| || || || ||||| |||| ||| Sbjct 2256 AGCGATGCGCTGAAAAACCTCATCGGACTTGAGCGTCAGGCTTAC 2212 Score = 136 bits (150), Expect = 1e-27 Identities = 188/261 (72%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 39244 AAGCTGTCGGACGAGCAGCATCACTGGGTTGATGGCTGGCTGCAACAGTGGGGTGCCTGG 39303 || || ||| | || ||| | ||||| | || | |||||| | |||||| || ||| Sbjct 5760 AATCTATCGAAAGACCAGTACGACTGGCTGAATAGTTGGCTGGAGTTGTGGGGCGCATGG 5701 Query 39304 TGCTATTCAGGCAGGCTGGAAAAGCGAATGACCAGCGTGATCGCAAAGTACATGGAAGCG 39363 || ||||||||||| |||||||||| |||| ||||||| ||| |||||| Sbjct 5700 GTTTACAGCGGCAGGCTGGAGAAGCGAATGAGCAGCATGATCGCTCAGTGGATGGAAAGC 5641 Query 39364 GCAGACCCTACTCGGGTAATGCCATCGCGCCCAATGTGTAACGACGACGACGGTATGTTG 39423 | || || | ||| |||||| ||||| ||||| || ||||| ||||| |||||| Sbjct 5640 GTTGAACCCAG-CGG--AATGCCTAGTCGCCCGATGTGCAATGACGATGACGGAATGTTG 5584 Query 39424 ATTTCTCAGGTCGTAGACCGCGTCCTCGCTATCGACAAAAAGGCGCTTGGCATCGTTCTA 39483 ||||||||||||||||| ||| | || |||||||| ||| |||||||| | || Sbjct 5583 ATTTCTCAGGTCGTAGATTCCGTTATGTGCATTGACAAAAAAGCGTTTGGCATCCTGCTG 5524 Query 39484 AGCTATTACGCTTTCGGCTCA 39504 || |||||| || ||| ||| Sbjct 5523 AGTTATTACTCTCACGGATCA 5503 >seq201909 Length=21394 Score = 170 bits (188), Expect = 5e-38 Identities = 715/1112 (64%), Gaps = 39/1112 (4%) Strand=Plus/Minus Query 34573 ATAAAACCCTCTACGTCCGAGAATTCTGACGAATCCTCAGACGGCTGTCGGAATGAGATT 34632 |||||| || || |||||||||||||| |||||||||| ||| ||| || || Sbjct 12148 ATAAAAACC-CTTCGTCCGAGAATTCTAACGAATCCTCTGACAAGCCTCGCAAACGCCTT 12090 Query 34633 CAGATCACTCGGCCAGATGCTGCAATTCAACGCGGAACCAAGTGGGGAACATCCGAAGAC 34692 | | ||| |||| || | |||||| | |||| ||||||||||| | || ||| Sbjct 12089 CCGGCAGTTCGAGCAGAAGCAGGAATTCAGAGTGGAAATAAGTGGGGAACTCCTGATGAC 12030 Query 34693 CTGCGTTGCGCTGAATGGCTGTTCTCAGTCGTGCAAAGC-ATCTCCTCAACCGCCAAGAA 34751 || ||||| ||| ||||| ||||| ||| | ||| | | ||||| | Sbjct 12029 CTTAAAGCTGCTGAGTGGATGTTCGATGTCGT-CAAGTCAATCGAGCCTTCTGCCAAACA 11971 Query 34752 GCCAAACTACGCATCATGGGCTAACGACATCCGCCTGATGCGAGAGAGCGACGGACGCAC 34811 |||| || || |||||| |||||||| || |||||||| |||| ||||| || Sbjct 11970 GCCAGCCTTTGCCGGATGGGCGAACGACATACGACTGATGCGGGAGAAAGACGGTCGGGA 11911 Query 34812 TCACAAGGAGATCGCCACGCTGTTCAAGTGGGCCTGCGATGACGACTTCTGGAAGGGGAA 34871 || || || || |||||| |||||| | | ||| ||||||| || || Sbjct 11910 CCATCGCGACATGTGCAGCCTGTTCCGCTGGGCCAGTCAGGACAGCTTCTGGTGTGGCAA 11851 Query 34872 TGTTCTTTGCCCAGCCACGCTGCGCAAGAAATGGACTCAGCTAGATATCAAGCGCCAAAA 34931 || |||||||| |||| ||| ||| |||| ||| | ||||| | ||||||||| | || Sbjct 11850 CGTGCTTTGCCCTGCCAAGCTTCGCGAGAAGTGGTCACAGCTGGTAATCAAGCGCGATAA 11791 Query 34932 ACTGGCATCAGGTAAACCCGCTGAAAGGCCAAAGGTCGACCTGACTAACACTGACTGGAT 34991 | | ||| | | || ||| | ||| | |||||| ||||| || ||||| Sbjct 11790 AGCCAAAACAGCCACAGCCTCTGGCAAGCCTGCTTTGGACCTGGACAACACGGATTGGAT 11731 Query 34992 TTACGGAGTTCAGCTATGAGGAGCGTT-TCAGAGCAGATACAAAAATTCAGCCGGGGGCA 35050 | | || || | |||||| | |||| ||| ||| || || || || || |||| Sbjct 11730 TAAAGGGGTAACGGTATGAGAAACGTTGTCACAGC-CATCCAGAA--TC--GCGATGGCA 11676 Query 35051 GATTCAGCGTGTGGCCAGCA-ACCTACCTGAGCAGCGCTGTGAAGC----GCAGCAGGT- 35104 || | || ||||| | ||| || || | ||| | ||| ||||| Sbjct 11675 AAT-----CTTTG--CAGCAGATGTAC----GC--CGGAGAGAAACCAAAGCAACAGGTG 11629 Query 35105 --TGAGCAAGTAGCCCATGTTATCAATGGGGTATTTACCCAGCTTCTCGCGGTATTCCCT 35162 |||||| | || || | |||||| | | || | ||||| | | ||||| Sbjct 11628 CCTGAGCAGGCCGCTCAAATCTTCAATGAGTTGTTCAGGCAGCTGAAGGGCGCTTTCCCG 11569 Query 35163 GCCAGCCTGGCCAACCGTGA----CCAGCGCGAGATAAACGAAATACGGCGTCAGTGGGT 35218 || ||| ||| | | | ||| ||| ||||||| | ||||| |||||||| Sbjct 11568 GCACTGATGG-CAAGCATCAAAACCCAAGAAGAGTTAAACGAGCTGCGGCGCCAGTGGGT 11510 Query 35219 GATGGCGTTCCGGGAAAACGGGATTACCAGCCTTGACCAGGTTTCTGCTGGTATGCGAAT 35278 |||||| || |||||||| ||||| | | ||||||||| || || ||| || Sbjct 11509 GATGGCCTTTGCTGAAAACGGCATTACGACAATCGACCAGGTTAACGCCGGGATGAAGAT 11450 Query 35279 CGCACGAAAGCAAGAGCGGCCATTCCTCCCATCGCCCGGCCAGTTCATAGCATGGTGCCG 35338 || || |||| || ||| |||||||| ||||| ||||| ||| | || |||||||| Sbjct 11449 TGCCCGCCAGCAGGAAACGCCTTTCCTCCCGTCGCCGGGCCAATTCGTCGCCTGGTGCCG 11390 Query 35339 GTCTGGCGAATTCAGCTCTGCCGGACTGCCTAGCCCTGACGAACTATACGGCCTGATGAT 35398 | ||| ||||| ||| ||||| | | ||||| || ||| | || |||| Sbjct 11389 CCAGTGTGAAATCAGCAAATACGGCCTGCCGGACTCCGACGAGCTTCACGACATGGTGAT 11330 Query 35399 GAAGTATTGCTCAGAGCGAAGCATGTACGACTCTGCGGAGGAATACCCCTGGCCGAGCAA 35458 | | || || | ||| | | | || | | |||| | ||| ||||| ||||| Sbjct 11329 GGACTACAGCGCCCGGCGCGGATTCTTCGCAAGTCCTGAGGCTTTCCCATGGCCCAGCAA 11270 Query 35459 CGCGACGTACTGGATGGTGACGAAACTGCGCGACCAGATGCGATCACTCAATCTTAGCGA 35518 || | ||||||||||| || || ||| | | |||||||||| | || || | | Sbjct 11269 TGCCGCTTACTGGATGGTCACCAAGCTGTACTCCGAGATGCGATCGCAAAACCTCACCAC 11210 Query 35519 GTCAGAGGTTAGATCACGCTGTGGCGTAGAGATTCGCAA--GATGGCGGATCGGATTAAG 35576 ||||||| | | | || || | | ||| | || ||| || || ||| || Sbjct 11209 GTCAGAGCT--GCGTAAGCACTGCCTGAAAGAGCTGAAATCAATGTCGCGCCGCATTGAG 11152 Query 35577 GCTGGCGAGGAAATCCCGGCGCCGGTTAAGCAAATTCCAAAACTATGCATACCGGTGAGC 35636 | |||||| ||| || || ||||| || || ||||| | ||| ||||| ||| Sbjct 11151 TCAGGCGAGCCAATTCCCGCACCGGTAGTTCAGATCCCAAAGATGCACATCCCGGTAAGC 11092 Query 35637 AATGAGGCGGGATTGTCGAAAATATCAGAAAT 35668 ||||| ||||| || ||||| |||| || Sbjct 11091 AATGAAGCGGGGCTGGATAAAATCGCAGAGAT 11060 >seq255299 Length=12406 Score = 107 bits (118), Expect = 5e-19 Identities = 153/210 (73%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 22265 CGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTACTTTTCAATGGTTTACGCAAT 22324 || ||||| |||||||| |||| | | |||| || |||||||| ||||||||| Sbjct 3329 CGTAGGTCACAGGTTCGAATCCTGTAGGGCGTACCAATAATTTTCAATCAGTTACGCAAT 3270 Query 22325 TCTCGTCAATCCGTCAT--TTCCT-CCTTGTGTCGTTTTTGTGTCG-CAGTCATCGAAAA 22380 || | ||||| | | ||| | || |||||||| ||||||||| |||| | |||| Sbjct 3269 TC---TTAATCCCGCCTGATTCTTCCCCTGTGTCGTATTTGTGTCGTCAGT-TGCCAAAA 3214 Query 22381 GCAGGTCAATTTTCTTGGCATGCTCAGTGAGATGGTTGGGGGCTAGGTGCGCGTATCTCC 22440 || |||||||||| || ||||| || ||||| || || || ||||| || || | | Sbjct 3213 GCGCGTCAATTTTCCGTGCGTGCTCGGTCAGATGATTCGGCGCCAGGTGAGCATAGCGTC 3154 Query 22441 TGACCATCTCTATGCACTCCCAGCCTCCCA 22470 |||||| || |||| |||||||||| || Sbjct 3153 GGACCATTTCAATGCTTTCCCAGCCTCTCA 3124 >seq147806 Length=6067 Score = 89.7 bits (98), Expect = 1e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 25910 CGCTCTACGCGGACGTCGGTTATCTCCAGCGTGATACGTGATGCCCAGCGAGGCATGTGG 25969 |||||||| || | || || ||||| || || |||||||| |||||||| ||||||||| Sbjct 5256 CGCTCTACCCGAATATCAGTAATCTCAAGTGTTATACGTGAAGCCCAGCGGGGCATGTGG 5315 Query 25970 ATAGATGGCGTCCAAGAACCTTCG 25993 |||||||| ||||||| |||||| Sbjct 5316 ATAGATGGTGTCCAAGGCCCTTCG 5339 >seq79056 Length=2380 Score = 84.2 bits (92), Expect = 6e-12 Identities = 131/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 39256 GAGCAGCATCACTGGGTTGATGGCTGGCTGCAACAGTGGGGTGCCTGGTGCTATTCAGGC 39315 |||||||| | ||| |||| ||||| | ||||| || ||| |||||||| Sbjct 11 GAGCAGCAGGATTGGATTGAGCAATGGCTAGAGTTATGGGGGGCATGGGTATATTCAGGT 70 Query 39316 AGGCTGGAAAAGCGAATGACCAGCGTGATCGCAAAGTACATGGAAGCGGCAGACCCTACT 39375 | | |||||||| |||| |||| |||| || ||| |||||| | ||| || | Sbjct 71 CGCTTAGAAAAGCGTATGAGCAGCATGATAGCCCAGTGGATGGAAAGTGTAGAGCCAAGC 130 Query 39376 CGGGTAATGCCATCGCGCCCAATGTGTAACGACGACGACGGTATGTTGATTTCTCAGGTC 39435 ||| || | | ||||| ||||||| || || ||||| |||||||||||||||||| Sbjct 131 --GGTTATCCGACAAGGCCCA-TGTGTAATGATGATGACGGAATGTTGATTTCTCAGGTC 187 Query 39436 GTAGA 39440 ||||| Sbjct 188 GTAGA 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137073746579782