Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq225968 107 3e-18 seq121512 89.7 7e-13 >seq225968 Length=28617 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| || | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 18943 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 18884 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||||||||| || ||||| || | || ||||| || || ||| Sbjct 18883 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 18824 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| ||| | |||||| |||| || ||||| || Sbjct 18823 GACACCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 18764 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||| |||||||| Sbjct 18763 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 18722 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/116 (77%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA- 69143 || |||| |||||||| ||||||||||||||||| || || || |||| | |||| || Sbjct 20414 ATGAATGTGTCTGCCAAGCCCTGAACCCCAATACCAATTGGCCTGTGTCGCATATTAGAC 20355 Query 69144 --ACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| ||| || ||||||||||| ||||| || ||||| || ||||| Sbjct 20354 CTCCTTGCAGTTTC---AACCGGATAATAATTCATATCGATTATTTTGTTTAGATT 20302 >seq121512 Length=219671 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 212873 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 212932 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 212933 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 212991 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 212992 AGATGCCCTCGAC 213004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682622308774440