Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq260686 152 6e-32 seq65234 150 2e-31 seq1462 127 2e-24 seq161181 102 9e-17 >seq260686 Length=13603 Score = 152 bits (168), Expect = 6e-32 Identities = 346/519 (67%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 143073 GGACTGAACAGAGTTATGTATTCATCTTTGCCAAGACGTTCCATCATCAGGTCGTTGATT 143132 || ||||||||||| || | |||| | || || || | |||||| | ||| | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 143133 TGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGT 143192 || | || ||||||| ||||| | ||||| | || ||||| ||||||||| || Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 143193 ACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCA 143252 || || || | || ||||| |||||||| ||||| ||| ||| || || ||||| || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 143253 CGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATA 143312 || || ||||| || || ||||| || || || || |||||||| || |||| ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 143313 ACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCC 143372 || || || |||||||| | ||| || ||||| | || Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 143373 GCGTTAATGCCAATACCTGCACGCTTACTGATATACT---CAATAATGCTTGCACTGGCT 143429 ||||||||||| ||||| ||||||| | | |||| |||| ||| | |||| Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGC- 5280 Query 143430 TTGTTAATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGA 143489 |||||| || | ||| ||| || ||||| | || || ||||| ||||| || Sbjct 5279 --GTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 5222 Query 143490 GTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTAGATACG 143549 ||||| || || | |||| ||||||||| || |||| ||||| | | || || | Sbjct 5221 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATC 5162 Query 143550 GCGTCATAAAAACGAATTACGTGCGCCAGGCGGTTTTCA 143588 || || || ||||| | |||| | || ||| ||||| Sbjct 5161 GCATCGTAGAAACGCTTGACGTAATCAAGACGGGTTTCA 5123 >seq65234 Length=1614 Score = 150 bits (166), Expect = 2e-31 Identities = 303/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 143127 TTGATTTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 143186 || ||||| | | |||| || || ||||| | || ||||| || | ||| | || || Sbjct 659 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 718 Query 143187 TTAAGTACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCA 143246 || | || | | ||| || | ||| |||||||| ||||| || | | |||||||| Sbjct 719 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 778 Query 143247 CCACCACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAA 143306 || || | |||||| ||||| ||||| ||||| ||||| ||||||||||||| | ||| Sbjct 779 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 838 Query 143307 GGAATAACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCT---GCACGC 143363 |||||| ||| ||||| |||| || |||| || | | || | || || || Sbjct 839 GGAATACATCCGGTATGAAATGCTTCTCCATTTCTGA---TAGGACTTCCTAAAGCTCGA 895 Query 143364 AACATCCCCGCGTTAATGCCAATACCTGCACGCTTACTGATATACTCAATAATGCTTGCA 143423 | || ||||||||||| || ||||| || | | | ||| | | || ||||| Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA---TTGCA 952 Query 143424 CTGGCTTT---GTTAATTGA-CTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCT 143479 || | | | ||||| || |||| | | || || |||||| | |||||||| || Sbjct 953 CTAGTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACT 1011 Query 143480 AAACTGACGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACG 143539 ||| |||||||| ||||| | | || | |||||| || || || | ||| |||| | Sbjct 1012 AAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAA 1071 Query 143540 AGTAGATACGGCGTCATAAAAACG 143563 ||| || | || | |||||| || Sbjct 1072 AGTGGAAATTGCATTATAAAAGCG 1095 >seq1462 Length=4781 Score = 127 bits (140), Expect = 2e-24 Identities = 330/498 (66%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 143072 TGGACTGAACAGAGTTATGTATTCATCTTTGCCAAGACGTTCCATCATCAGGTCGTTGAT 143131 ||||||||| || | || | | |||| | ||||||| ||| || | |||||| Sbjct 1491 TGGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGAT 1432 Query 143132 TTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAG 143191 ||| | || || || |||||||| | ||||| | || || || ||| || || || Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 143192 TACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACC 143251 || | | | || | ||| | ||||| || || || ||| ||| |||||||| || Sbjct 1371 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 1312 Query 143252 ACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAAT 143311 || || |||||||| || || ||||| || || || ||||||||||| |||| || || Sbjct 1311 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 1252 Query 143312 AACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCC 143371 | || ||||| ||||||| | |||| ||| ||||| | || Sbjct 1251 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 1192 Query 143372 CGCGTTAATGCCAATACCTGCACGCT----TACTGATATACTCAATAATGCTTGCACTGG 143427 || || || || || ||||| || | || || || | ||| || | | ||| Sbjct 1191 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTA-ACGATAGCACTAGAAGTGG 1133 Query 143428 CTTTGTTAATTGACT-TAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGA 143486 | ||| || || | |||| | || ||| || |||| || || ||||| || || Sbjct 1132 C---GTTGATAGAGTCTAAGCTA-TCGCCACACTCGATAAGCACGCATGAGCTGAATTGG 1077 Query 143487 CGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTAGAT 143546 |||||||| || || |||| ||||| ||||| ||||| || ||||||| | || || Sbjct 1076 CGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGAC 1017 Query 143547 ACGGCGTCATAAAAACGA 143564 ||||| |||||||| ||| Sbjct 1016 ACGGCATCATAAAAGCGA 999 >seq161181 Length=1368 Score = 102 bits (112), Expect = 9e-17 Identities = 230/344 (67%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 63891 TAAAAGGTTTCAGGAGATCTTGGTTTTCTTTAAAGCGATTGATGTAGTCATTTACACCAA 63950 |||| ||||| || | || ||| || ||| || | | || ||||||||| | || | Sbjct 768 TAAATGGTTTTAGCAAATGTTGATTACGTTTGAATCTTTCAATATAGTCATTTTCTCCCA 709 Query 63951 GCTTCTTGTACATTGCAATGATTGTGTGGTAGTTTTCCCAAGCATATTCGCGGAACCAAC 64010 || |||| ||| | | ||| || || | |||||||||||| |||||||||| Sbjct 708 TTCGCTCATACAAGTCAAGCACTTTGTCATAATTGTTCCAAGCATATTCACGGAACCAAC 649 Query 64011 CACTCGTAATTGAAGTACAAACCTTCTCCAAAGCCA--TCATAA-AGGAATGTTCAGATG 64067 |||| || || ||||||||| ||| ||| || | ||| || || || ||| || Sbjct 648 CACTTGTGATGCTAGTACAAACTTTCATCAAGGCAAGTTCAAAACTATAACGTGCAGCTG 589 Query 64068 AAACATTTTTGAAATCGTTTGGAATTTGAGAACGTTCCAACGCTAATACGCAAGTTTCTT 64127 |||||| || |||||||| ||| || | || | ||| |||||||||| Sbjct 588 ------GTTTGAAGTCAAACGGAATTTGGCTACGCTCAAGAGCAAGTACACAAGTTTCTT 535 Query 64128 CGTACACACCAGCCAATTGGATTTCTTTAGGCAATTCAAAGAATTTCTTCTTATCAGTCA 64187 | || || ||| || | || |||| | | |||| ||||| | ||| |||| Sbjct 534 CATAAACCCCAAACAGACGAATCTCTTCATCTACAGCAAAAAATTTATCTTTACTGGTCA 475 Query 64188 TTACCTGAGACCCATCTTTCATGTAGAAAGTATAAGCTGGACGA 64231 | || || |||||||||||||||||||| || || ||| || Sbjct 474 TCACTTGTTCACCATCTTTCATGTAGAAAGTGTATGCAGGATGA 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541562486579160