Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq260686 174 2e-38 seq1462 84.2 2e-11 >seq260686 Length=13603 Score = 174 bits (192), Expect = 2e-38 Identities = 284/404 (70%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 58355 GTTGATCTGAACACCGTAGTCAGTACGGCGCTCGCGGTTGTTCTCAATACCACGGTTGTT 58414 ||| | ||| || |||||||| || | ||| |||||||| |||| || |||||||| Sbjct 5585 GTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTT 5526 Query 58415 CTTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGGTAATACATGGTTGCTGA 58474 ||||||||| | || | || | | | |||||||| ||||| ||| ||| |||| Sbjct 5525 CTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGC 5466 Query 58475 GCCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCAACGAACTTCTTGATGAA 58534 ||||| || | || |||||||| ||| ||||| | ||| | ||| ||| Sbjct 5465 ACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAA 5406 Query 58535 CGGGATCGTACCGGTATG-AGTCATCTCACCGTCGCGGATAGAGGAACCCAGGGCACGGA 58593 ||| || ||||| || | | | |||||| ||||||| | | ||||| ||||||| Sbjct 5405 CGGAATGCAGCCGGTGTGGAATGCT-TCACCGCCGCGGATCGGGCTGCCCAGCGCACGGA 5347 Query 58594 TAGCG-CCGAAGTCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTG 58652 | ||| ||| || || |||||||| ||||||| ||| ||||| ||||| || ||| || Sbjct 5346 T-GCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTG 5288 Query 58653 CCAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAAC 58712 || || ||||| || ||| |||| || ||| ||||| || || ||||||||| Sbjct 5287 GAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAAC 5228 Query 58713 TGACGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGGGAG 58756 || || || |||| |||||||| | ||| || || || || || Sbjct 5227 TGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 5184 >seq1462 Length=4781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 260/400 (65%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 58355 GTTGATCTGAACACCGTAGTCAGTACGGCGCTCGCGGTTGTTCTCAATACCACGGTTGTT 58414 |||||| || || ||||| || | || | ||||| |||| ||||||||| || Sbjct 1437 GTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATT 1378 Query 58415 CTTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGGTAATACATGGTTGCTGA 58474 ||||| || | | | || | | ||||||||||| |||||| ||| || || | Sbjct 1377 TTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGC 1318 Query 58475 GCCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCAACGAACTTCTTGATGAA 58534 || || || | || || || || || |||| | ||| | ||| ||| Sbjct 1317 ACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAA 1258 Query 58535 CGGGATCGTACCGGTATGAGTCATCT-CACCGTCGCGGATAGAGGAACCCAGGGCACGGA 58593 |||||| ||||||||| | | || |||| | ||||| | | || || ||||| | Sbjct 1257 CGGGATACAACCGGTATG-GAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAA 1199 Query 58594 TAGCGCCGAAGTCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTGC 58653 || ||| | | |||||| || || || | || |||||||| ||||| || | Sbjct 1198 TACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAG 1139 Query 58654 CAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAACT 58713 ||| || | || ||| | | | || ||| ||| ||| || || ||||||||||| | Sbjct 1138 AAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATT 1079 Query 58714 GACGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGG 58753 | || || | || || || || |||||||| || || || Sbjct 1078 GGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGG 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515546651659200