Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq65234 194 2e-44 seq1462 143 3e-29 seq286911 134 1e-26 seq260686 123 3e-23 seq462907 118 1e-21 seq189010 114 1e-20 seq234545 84.2 2e-11 >seq65234 Length=1614 Score = 194 bits (214), Expect = 2e-44 Identities = 316/455 (69%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893 ||| || | ||| ||||| | | | ||||| |||||||| | | ||||| || | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953 | | || || ||||| || || | ||||||| || |||||||| ||||| ||| ||| Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013 ||| || || || || | || || ||||||||||||||||||||||| | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073 ||| | |||||||| || ||||| | |||| ||||| | || ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 15133 ||||||||| ||| ||||| |||||||| || ||||| | | ||| || | ||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 15134 ACTGTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 15193 || ||| ||||||||||| || | ||| || |||||| | |||||||| Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 15194 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 15253 |||||| |||||||| || || | | |||| |||||||||||| || | || || | Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 15254 TCGAGTAGATACAGCGTCATAAAAGCGAATAATAT 15288 ||| || | || | ||||||||| ||||| Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCGCTGAATAT 1103 >seq1462 Length=4781 Score = 143 bits (158), Expect = 3e-29 Identities = 339/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 14783 CACATC---TGGACTGAACAGTGTGATGTACCCAT-TTTTACCGAGACGTTCCATCATCA 14838 |||||| ||||||||| || | ||| | || ||||||| ||||||| ||| | Sbjct 1500 CACATCCGATGGACTGAATAGCGAGATATCGCCGCCTTTTACC-AGACGTTGATACATGA 1442 Query 14839 AATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGT 14898 | |||||||| | ||||||||||| ||||| | ||||| | || ||||| || Sbjct 1441 GTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGT 1382 Query 14899 TGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAG 14958 | || || | || || | | |||||| || | |||||||| || ||| | || || | Sbjct 1381 TATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCG 1322 Query 14959 CTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCC 15018 | ||||| || || || |||||||| || |||||||| || || ||||| || ||||| Sbjct 1321 CGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGT 1262 Query 15019 AGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTC 15078 |||| || || || ||||| |||| ||| || ||| |||| || | Sbjct 1261 AGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCAC 1202 Query 15079 GAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATAATACT 15136 |||| || || ||||| || || || || || ||| ||| | || |||| ||| Sbjct 1201 GAATACGGCCAGCATTGATACCGATCCCTGCGCG-TTG-TGAAACGTATTTAACGATAGC 1144 Query 15137 GTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACT 15196 || | || || ||||| | | ||||||| || |||| || || || || Sbjct 1143 ACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCT 1084 Query 15197 AAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCG 15256 || || ||||| || || || |||| ||||| || || ||||| || ||||| | Sbjct 1083 GAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAA 1024 Query 15257 AGTAGATACAGCGTCATAAAAGCGA 15281 || || || || |||||||||||| Sbjct 1023 GGTCGACACGGCATCATAAAAGCGA 999 >seq286911 Length=6367 Score = 134 bits (148), Expect = 1e-26 Identities = 77/79 (97%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 103765 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 103824 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5712 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 5771 Query 103825 ACCACTGAGCTAAGGGGCC 103843 ||||||||||||||||||| Sbjct 5772 ACCACTGAGCTAAGGGGCC 5790 >seq260686 Length=13603 Score = 123 bits (136), Expect = 3e-23 Identities = 269/403 (67%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 14850 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 14909 |||| ||||| || | |||||| | |||||| | || || || ||||||||| | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 14910 ACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 14969 |||| ||| |||| || || |||||||||||||| || | || || |||||||| || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 14970 CGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 15029 || || ||||| ||||| || || || || || ||||| || || || |||| ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 15030 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 15089 ||| || || | |||| || | || ||| || || || |||| Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 15090 GCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCTGCA 15149 ||||| ||||| ||||| || |||| | ||||| | ||| | | | || Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 5279 Query 15150 TTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAGTA 15209 ||||| |||| || ||||| ||||| | ||| || || || ||||| || || Sbjct 5278 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 5219 Query 15210 GGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCT 15252 || || || | || | |||||| || || |||| ||||||| Sbjct 5218 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 >seq462907 Length=336 Score = 118 bits (130), Expect = 1e-21 Identities = 75/80 (94%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 103765 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 103824 || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 19 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 78 Query 103825 ACC-ACTGAGCTAAGGGGCC 103843 ||| ||||||||| |||||| Sbjct 79 ACCAACTGAGCTATGGGGCC 98 >seq189010 Length=996 Score = 114 bits (126), Expect = 1e-20 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 103771 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 103830 |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 777 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 836 Query 103831 GAGCTAAGGGGCCGTA 103846 ||||||| ||||| || Sbjct 837 GAGCTAAAGGGCCATA 852 >seq234545 Length=12910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/175 (74%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 103682 AATTTGGCTGGGAATACTGGGCT-CGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCT 103740 |||||||||||| | | ||| | |||||| | || | || |||| || || | |||| Sbjct 12221 AATTTGGCTGGGG-TGCAGGGATTCGAACCCCGGAATGCTGGTATCAGAAACCAGAGCCT 12163 Query 103741 TACCAACTTGGCTAATTCCCAATTAT-TTGGTGGCCCCTGCTGGACTTGAACCAGCGACC 103799 ||||| |||||| | |||||| | |||||||| || | ||| | ||||| | |||| Sbjct 12162 TACCA-CTTGGCGACACCCCAATAAAATTGGTGGCTACTACGGGAATCGAACCTGTGACC 12104 Query 103800 A-AGCGATTATGAGTCGCCTGCTCTAACCA-CTGAGCTAAGGGGCCGTAATTCTA 103852 ||| ||||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 12103 CCAGC-ATTATGAGTGCTGTGCTCTAACCAGCTGAGCTAAGTAGCC-TAATTTTA 12051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502632545118440