Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq65234 132 1e-25 seq1462 107 4e-18 seq430400 95.1 3e-14 >seq65234 Length=1614 Score = 132 bits (146), Expect = 1e-25 Identities = 677/1064 (64%), Gaps = 33/1064 (3%) Strand=Plus/Plus Query 259895 ATTTTTTATATAACTTTTC--AAATTCTTTTTGATCAGAGCAGAATGCTTCATATAGCCC 259952 || ||| |||||| ||| | ||||| ||||||||| ||| | || || ||||| Sbjct 532 ATATTTAATATAAATTTCCTTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGTT 591 Query 259953 AGGGACTTCATTAGGACTAAAGAATGTAATATTCTTTCCATCAACCAAACGTTGATACAA 260012 ||| || ||| ||||||||| |||||||| || ||||| | || | |||||||| Sbjct 592 AGGAACGTCAGAAGGACTAAATAATGTAATTTTTTTTCCTAGTAGCATTCTTTGATACAT 651 Query 260013 AGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACCTTT 260072 ||| || | ||| | | ||| || || ||||| || | || ||| | ||| | Sbjct 652 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 711 Query 260073 GTTATTTTTAAGGACTACCAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAACAGT 260132 |||||||| | |||| || || |||| ||| | |||||| | |||| | |||||| Sbjct 712 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 771 Query 260133 TGCTGCACCACCACGAACACCACCTTGTGAACAGCTTTTAACAGTC--TTAGCAGTAGCT 260190 ||| || || || | ||| |||||||| ||||| ||| || | || | ||| | Sbjct 772 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTT 831 Query 260191 GCAATGAACGGAATCAGCCCAGTGTGTACTGCATCACCTGAACGAATCTCGGAGTCC--A 260248 || || ||||| || || || | ||| || || | || ||| | | | Sbjct 832 ATAA--AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATA--GGACTTCCTA 887 Query 260249 GAGCACGAATGCGGCCCATATTAATACCAAGACCAGCTTTACGTGAAATATAACGTAGAA 260308 ||| ||||| | || ||||| || | || ||| | |||| ||| || || Sbjct 888 AAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA 947 Query 260309 TAGCG-TGGTTAGAGGAACCAATACTATCCAAGCTGTCACCAACGTTTAGTACTACACAA 260367 | || | ||| || | |||| | || | || || | | || |||||| Sbjct 948 TTGCACTAGTTGTAGCATT-AATAGAGTTTAAATTATCTGCACATTCAATTAACACACAA 1006 Query 260368 GAGCTAAACTGACGTGTATTTGTACGTAGACCAGCCATAATAGGCGTAGGAAGACTAATG 260427 || ||||| ||||| || ||| | || || | |||||| || || || ||| || Sbjct 1007 GAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATT 1066 Query 260428 TCAAAGTTACTTACTGCATCATAAAACTTTTTAACATATGACATACGAACAGAACGATCA 260487 | ||| | | ||||| |||||| | || ||| |||||||| | || Sbjct 1067 TTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGAATATTTTTTTCG 1126 Query 260488 TACTCCATAAAGATGATTGCTGCAATAGTCATATATGCCATTTGTGGAGTTTCATAAATT 260547 || | ||| | | ||| | || |||||| | ||||| | ||||||| ||| Sbjct 1127 TATTTAGAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTTTCATATATT 1186 Query 260548 TTCTTAGTAACGCGATTTTTGTAA-AGGTATTTTCCTTCCCATTGACGCATTGCAACATA 260606 | |||||| ||||||| |||| | || |||||||| |||| | ||| |||| Sbjct 1187 TCTCCAGTAACACGATTTT-GTAATAAATACTTTCCTTCTAATTGTTTTACTGCTGCATA 1245 Query 260607 AGTAAATTTATCGTCACGTTTATGTTTGATATA--ACGTCCAAGCTCTTCTATTTCTTGA 260664 || ||| || |||||| ||| | |||| | | || | ||| | ||||| | Sbjct 1246 AGAAAAATTCATGTCACGCCAATGATCGATAAATGAATTC--ATTTCTACATATTCTTTA 1303 Query 260665 AGAGTATATTTCTC-AAGAATTTCAGGATCATATATTTTGGTATCAACCATTTCTTGAAG 260723 | || ||| || | || ||||| | |||||| || || ||||||| || | Sbjct 1304 AAAGAATAATTTTGTAATAATTTTTCG-TCATATTTTCCTAAATTGACCATTTTTTTTAC 1362 Query 260724 ATGAG----CAGTATATTTA------AT---TGGGTCATACTGCCCATATACTTGCTTAC 260770 |||| ||| ||| | | || ||| ||| | || || || ||| || | Sbjct 1363 ATGATGATACAGAATAATGATACAGAATAGGTGGTTCAAATTGACCGTAAGCTTTTTTCC 1422 Query 260771 GAATACTATAGTTTAATAGTCTTCCAGCAACATATTGGTAATTAGGTGTATCTTCTGAAA 260830 || | | | | |||||| | || | |||||| |||| |||||||||||| |||| Sbjct 1423 TAAGATGAAAAATAGCAAGTCTTGCTGCCATATATTGATAATCAGGTGTATCTTCAGAAA 1482 Query 260831 TAAGTTCTGCTGCTGCTTTAATAAGAATATCATGAATAGTACTAGTTTCAATACCTTCAT 260890 | | |||||||| |||||||||| | ||||| ||| | ||||| ||| | || Sbjct 1483 TTAAATCTGCTGCAGCTTTAATAATTGTCTCATGTATATTCACAGTTTTTATATTGTTAT 1542 Query 260891 AAAACTGAAGCTGTGCTCGGATTTCAATTTCAGAAACTGAAATA 260934 |||| |||| ||| || | ||||| || |||||| || ||| Sbjct 1543 AAAATTGAATACGTGAACGTAATTCAACTTGAGAAACAGATATA 1586 >seq1462 Length=4781 Score = 107 bits (118), Expect = 4e-18 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 259911 TTCAAATTCTTTTTGATCAGAGCAGAATGCTTCATATAGCCCAGGGACTTCATTAGGACT 259970 |||||| ||| ||| |||| | |||| || || |||||||| || || || ||||| Sbjct 1545 TTCAAACTCTGCTTGGTCAGCGAAGAAGGCATCGTATAGCCCTGGCACATCCGATGGACT 1486 Query 259971 AAAGAATGTAATATTCTTTCCATCAACCAAACGTTGATACAAAGTTTTGTTTACTTGGAA 260030 || | | |||| || | |||| ||||||||||| |||||| | ||| | Sbjct 1485 GAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATTTGTAC 1426 Query 260031 ACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACCTTTGTTATTTTTAAGGACTAC 260090 | || || || ||||| ||||||||| ||| ||| ||||||||| ||||||| Sbjct 1425 GCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAA 1366 Query 260091 CAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAACA--GTTGCTGCACCACCACGA 260148 ||| | |||| |||||| ||||||| ||| | |||| || || ||||| || || Sbjct 1365 TAAGCTTTCAATTTCCAAGTGCCACATAGGGTA--AAACAGTGTCGCGGCACCCCCGCGT 1308 Query 260149 ACACCACCTTGTGAACA 260165 || || ||||| || || Sbjct 1307 ACGCCGCCTTGCGAGCA 1291 >seq430400 Length=268 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 260788 AGTCTTCCAGCAACATATTGGTAATTAGGTGTATCTTCTGAAATAAGTTCTGCTGCTGCT 260847 |||||| | || | |||||| |||| |||||||||||| ||||| | |||||||| ||| Sbjct 211 AGTCTTGCGGCCATATATTGATAATCAGGTGTATCTTCAGAAATTAAGTCTGCTGCAGCT 152 Query 260848 TTAATAAGAATATCATGAATAGTACTAGTTTCAATACCTTCATAAAACTGAAGCTGTGCT 260907 ||||| | | ||||| ||| | ||||| ||| | ||||||||||| ||| Sbjct 151 TTAATGATTGTTTCATGTATATTCACAGTTTTTATATTGTTATAAAACTGAATACGTGAA 92 Query 260908 CGGATTTCAATTTCAGAAACTGAAATA 260934 || | ||||| || |||||| || ||| Sbjct 91 CGTAATTCAACTTGAGAAACAGATATA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106706041071608