Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq167765 100 1e-16 seq13560 91.5 6e-14 >seq167765 Length=1558 Score = 100 bits (110), Expect = 1e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 8778 ATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGGAAATCTTACAGGT 8837 ||||| ||||||||||| ||||| |||||| |||| ||||| || || || | || ||| Sbjct 516 ATTTTGCCTCGTTCTGGATTAGGTCATAAAAATGGAATTGTTCTAGGTAACTTGACTGGT 457 Query 8838 CTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAATCGCTCTACAAAG 8897 | |||||| ||||||||||| ||||| ||| || | |||||||| || ||| Sbjct 456 TTAATTGATTCCGATTATCAAGGCGAACTAATGCTATCTATTTGGAATCGTAGTAAAAAT 397 Query 8898 CCTTTTACTATTAATCCAGGTGACCGTATTGCTCA 8932 |||| ||||||||| ||| | |||||||| Sbjct 396 AATTTTTTTATTAATCCCTATGATAGGATTGCTCA 362 >seq13560 Length=35075 Score = 91.5 bits (100), Expect = 6e-14 Identities = 212/320 (66%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 8695 CATTCGAACTTAAACCGGGAGAAACTACTCTGGTAAATACTGGTTTAGCTATCCATCTGG 8754 |||||| ||| || ||||| | || || |||||| || || | ||||| ||| | | Sbjct 3562 CATTCGTACTGAATCCGGGTGCCACCACGCTGGTACCCACCGGCCTGGCTATTCATATCG 3621 Query 8755 ATGATGTTCACTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTA 8814 ||| | | || | |||| || || || ||||| | || |||||||| || Sbjct 3622 CCGATCCTGAACTGGCCGCGGTGATCTTGCCGCGCTCTGGCCTTGGCCATAAACACGGCG 3681 Query 8815 TTGTGCTTGGAAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAA 8874 | || || || ||||| || || ||||| ||||||||| ||| | |||||||| Sbjct 3682 TGGTTCTGGGCAATCTGGTTGGCCTGATTGACTCTGATTATCAGGGGCAGCTGATGGTTT 3741 Query 8875 GCCTCTGGAATCGCTCTACAAAGCCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGT 8934 | ||||||| ||| | | |||||||| | || || || ||||| |||||| Sbjct 3742 CCGTCTGGAACCGCGGGCAGGACTCCTTTACTATCGAGCCTGGCGAACGTATCGCTCAGA 3801 Query 8935 TAGTTATTGTGCCTGTAATGCAGCCTGAATTTGTTATAGTAGACTCTTTTGAAGCTACTG 8994 | || | ||||| || | ||| ||||||| | | || || || || || | | Sbjct 3802 TGGTGTTCGTGCCGGTGGTACAGGCTGAATTCAATCTGGTGAACGACTTCGACGCCAGCG 3861 Query 8995 AAAGAGGCGAAGGTGGTTTC 9014 | | ||||||||||||||| Sbjct 3862 TACGTGGCGAAGGTGGTTTC 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 217312918812206