Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq196645 197 3e-46 seq201909 188 2e-43 seq434220 114 3e-21 seq123396 113 1e-20 seq37562 107 5e-19 seq259424 84.2 5e-12 >seq196645 Length=3446 Score = 197 bits (218), Expect = 3e-46 Identities = 282/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 23291 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCATT 23350 ||| || | | |||| ||||| || ||||| || | |||||||| | |||| | |||| Sbjct 3365 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 3306 Query 23351 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 23410 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 3305 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 3246 Query 23411 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 23468 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 3245 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 3188 Query 23469 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 23528 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 3187 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 3128 Query 23529 ATTGATAAAAACAGGCCATTCAGTAGCGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 23588 || | || || || || || || || ||||| || || | ||| ||||| ||| | Sbjct 3127 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 3068 Query 23589 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTTCTGA 23648 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 3067 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 3008 Query 23649 ATAGCAGCCAGTCTTGCGTAAAATTCTTTGCTCAT 23683 || | || || |||||||||||||||| ||||| Sbjct 3007 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 2973 >seq201909 Length=21394 Score = 188 bits (208), Expect = 2e-43 Identities = 152/178 (85%), Gaps = 12/178 (7%) Strand=Plus/Minus Query 37374 GGGCTTTTTTACATCTGCAGTAAACC---GCGCATCGCAGCGCGTAACAATCCCGAGTCT 37430 ||||||||||| |||||||| || |||||||||||||| || ||||||||||||| Sbjct 3787 GGGCTTTTTTA----TGCAGTAAGCCCCCGCGCATCGCAGCGCATATCAATCCCGAGTCT 3732 Query 37431 TTCAGAAAGCTGAGCCTGAGAATTGCCGTATATGGTGGCGACCATCTCGGGGACGGCTTT 37490 |||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||||| Sbjct 3731 TTCAGAAAGCTGAGCCTGAGAAAAGCCGTATA-GGTGCGGACC-TCTCGGGG-CGGCTTT 3675 Query 37491 TCTGTGCGAACAGGCTCATCTTTCTAAAAGGTAAAGACGCAATGAACTACCCAACCGT 37548 |||||||||||||||||||||||||||||||| | || ||||| || ||||| || Sbjct 3674 TCTGTGCGAACAGGCTCATCTTTCTAAAAGGT--ATCCGTAATGACATATCCAACAGT 3619 Score = 149 bits (164), Expect = 2e-31 Identities = 258/375 (69%), Gaps = 0/375 (0%) Strand=Plus/Minus Query 27317 TTCCACGACAACACCGATAATCTTGCAGTTCCCGTTGATAGGAGTCATAGGCCATGAAGG 27376 |||||| | |||||||||||||||||||| |||||||||||| |||||||||| || Sbjct 14764 TTCCACAGCCACACCGATAATCTTGCAGTTACCGTTGATAGGAACCATAGGCCATTGCGG 14705 Query 27377 ATTCAGGCCTTTCAGGTACTTCTGACCGCCATCTATAACCAGTTTCTTGAATGTTGCTTC 27436 || || || || ||||||||||| ||||| || |||| ||| ||| || || || || Sbjct 14704 GTTAAGCCCCTTGAGGTACTTCTGTCCGCCGTCGATAATCAGGCGCTTAAAGGTGGCCTC 14645 Query 27437 GTTCGCGTCAGTCAGTTTGGCTACAACAAGGCTTCCATTCACTGGCTCGCGTCCAGTATC 27496 ||| | ||| | || || |||| || ||||| || | | || | || ||||| Sbjct 14644 GTTTGAGTCCGAAAGCTTCGCTATCACTAGGCTGTTGTTGATCGCATCTCTGCCGGTATC 14585 Query 27497 TACTAACACCATATGACCTTCAGGGATGCTTTGACCTACAGGTGAGGTCATGGAATCACC 27556 | | ||| | |||||||| || ||| | || |||| | ||||| |||||||| Sbjct 14584 AAAAAGCACAAACGTGCCTTCAGGTATACTTGGCCCAGCAGGGGCAGTCATCGAATCACC 14525 Query 27557 TTCAACCCTCAGCCAGAATCCATCGCCTAATAAGTTAACGTCACTGTCATACCATTCATC 27616 ||| || |||||||| |||| ||| || || | | ||| ||| ||| || Sbjct 14524 TTCTACTTCAAGCCAGAACGCATCACCTTGTATGTGAGCATCAGACTCAAGCCAGAGGTC 14465 Query 27617 AATGTCCTTGATATCGTAGGGTTCACAAGCTTCACACCACGAACCAGCTCTAACCATGCT 27676 ||| ||||| | || | ||| ||||| ||| ||| | ||||| ||| |||| Sbjct 14464 AATATCCTTAAGCGTATATGCTTCGCAAGCCTCAGCCCATGCGCCAGCCTGCACCTTGCT 14405 Query 27677 AATCAATGGATATTT 27691 | || || ||||| Sbjct 14404 GAGCACCGGGTATTT 14390 >seq434220 Length=273 Score = 114 bits (126), Expect = 3e-21 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 28951 ACGAAAAATCAGAGCAAGGTTGCCCACGCCATATGCCGTAAAACATACGGCTACGGTAAA 29010 || ||||||||| ||||||||| || || | ||||| || |||||||||| | || Sbjct 8 ACTAAAAATCAGGCCAAGGTTGCACATGCTGTTTGCCGGAAGACATACGGCTTCAACAAG 67 Query 29011 AAGATGGATCGCATCTCTGATAGTCAGTTAGCTCAAATTACCAGGCTGCCAAGACAGAAG 29070 |||| |||||| || ||||||| || | | | |||| | || |||||||||||| Sbjct 68 AAGACGGATCGTATTGCTGATAGCCAACTGATTGAGCTTACTAACCTTCCAAGACAGAAG 127 Query 29071 GTAAACAAGGCCAAGAATGAGCTTATCGCGATGAAGGTTATCCTTCGCGAAGGCCAGCAA 29130 || || |||||||| || || | | || ||||| ||| | | || ||| | || Sbjct 128 GTGAATAAGGCCAAAAACGACTTGCTAGCCATGAAAGTTTTAATAATGGATGGCAATAAA 187 Query 29131 ATCGGGCCTAACAAGAACATCGAGGAATGGCAAATAGAAGGGTGTCACTACTCTGGTGAT 29190 || || || || |||||| | | || ||||||||| ||| |||||| | ||| Sbjct 188 ATTGGCCCAAATAAGAACCTGAATGAGTGGCAAATAACAGGTTGTCACCATAACAGTGTC 247 Query 29191 AATGTCACTGCATTGGTGACAAAAAG 29216 | |||||| | | |||||||||| Sbjct 248 AGTGTCACCAAAACGATGACAAAAAG 273 >seq123396 Length=12579 Score = 113 bits (124), Expect = 1e-20 Identities = 327/490 (67%), Gaps = 20/490 (4%) Strand=Plus/Minus Query 19078 AAGCTGCTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGCTGGCA 19137 |||||||| ||||||||||| |||||||||| || || | ||||| ||| |||| || Sbjct 12578 AAGCTGCTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCA 12519 Query 19138 ACAAAGACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAA 19196 || | || || || ||| | || | ||||||| ||| | ||| || Sbjct 12518 ACCCCTGCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAA 12460 Query 19197 GATGGGCAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTCCTCGATAAAGC 19256 |||||| |||||||||||||| || || || || || || ||||| | | || || || Sbjct 12459 GATGGGGAATGTTATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGA-AAGGC 12401 Query 19257 CA-TGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCAGCA 19315 | | | | | | | || | ||||| ||| | || | ||||| ||||| | Sbjct 12400 TACTTGCGATGAAAACCCCGGTAATGTTCCCCGGACAGGAACTGGACAAAGCGATCGAC- 12342 Query 19316 TCGCTGCAGC-CAACCGATTCGTAAATAGAATAA---GGGGAGG--GATGGATATAGGTT 19369 || | | | ||| || ||| || ||| || | | | | ||| ||||| Sbjct 12341 -CGATCCTCCGCAA---ATCTGTACAT-GAAAAACCTGCGCACGAAGATAGATATCCCCG 12287 Query 19370 ACTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGAGATGAATGT-- 19427 | ||||| || ||||||||||| | | || ||||| | || || ||| || Sbjct 12286 AATGGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTATC--AGGCGAAGGTAT 12229 Query 19428 CGAGCCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATA 19487 | ||| || || || || ||||| || ||||| || |||||| ||||| | || || Sbjct 12228 CATGCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGGTTTA 12169 Query 19488 CAATAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATT 19547 || ||||| |||||| | |||| ||||||||||| ||||||||| ||||||||||| | Sbjct 12168 TAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAAAGT 12109 Query 19548 GTTCTGGCAC 19557 | |||||| Sbjct 12108 CCTGTGGCAC 12099 Score = 105 bits (116), Expect = 2e-18 Identities = 224/329 (68%), Gaps = 4/329 (1%) Strand=Plus/Minus Query 27315 GCTTCCACGACAACACCGATAATCTTGCAGTTCCCGTTGATAGG-AGTCATAGGCCATGA 27373 ||||| ||||| ||||| | ||| ||||||| ||||| || || ||| | || | Sbjct 7549 GCTTCTACGACTACACCAACAATTCTGCAGTTACCGTTTATGGGTAGT-AGCGGGTAGCT 7491 Query 27374 AGGATTCAGGCCTTTCAGGTACTTCTGACCGCCATCTATAACCAGTTTCTTGAATGTTGC 27433 ||| || || ||| | | ||| ||| | ||| ||||| ||| ||||| || || Sbjct 7490 AGGGTTAAGTGGTTTTAAAAATTTCCTACCACTATCAATAACATATTTTTTGAAAGTAGC 7431 Query 27434 TTCGTTCGCGTCAGTCAGTTTGGCTACAACAAGGCTTCCATTCACTGGCTCGCGTCCAGT 27493 ||||||| |||| |||||||| ||||| | ||| |||||| ||||| || || Sbjct 7430 CTCGTTCGTGTCATCAAGTTTGGCCACAACTAAGCTACCATTCTTAGGCTCTTTACCTGT 7371 Query 27494 ATCTACTAACACCAT-ATGACCTTCAGGGATGCTTTGACCTACAGGTGAGGTCATGGAAT 27552 |||||||| | | ||| ||||||||||||||| || | || ||||| || | Sbjct 7370 GTCTACTAAGATCGCCATG-CCTTCAGGGATGCTTATGCCGCTCTGAGATGTCATTGAGT 7312 Query 27553 CACCTTCAACCCTCAGCCAGAATCCATCGCCTAATAAGTTAACGTCACTGTCATACCATT 27612 |||| | || | |||||||||||||| || | | |||| || ||||| Sbjct 7311 CACCCTGTACACGAAGCCAGAATCCATCCCCCTCGACATGGGCGTCTGAATCTAGCCATT 7252 Query 27613 CATCAATGTCCTTGATATCGTAGGGTTCA 27641 |||||||||| || |||| | || ||| Sbjct 7251 CATCAATGTCTTTTGGATCGGACGGCTCA 7223 >seq37562 Length=17931 Score = 107 bits (118), Expect = 5e-19 Identities = 358/544 (66%), Gaps = 20/544 (4%) Strand=Plus/Plus Query 19024 GAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCTTCTACGTCAAATAAGCTG 19083 || ||||| ||| | ||||| || | |||| | | | | | | || || |||||| Sbjct 2014 GAGCTGGCGAAGGTGTGGCTGGCGTTGGAAAACAACAAGGTGTTTTCATCTAACAAGCTG 2073 Query 19084 CTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGCTGGCAACAAAG 19143 || ||||||||||| |||||||||| || || | ||||| ||| |||| |||| Sbjct 2074 CTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCAACTCCT 2133 Query 19144 ACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAAGATGGG 19202 | || || || ||| | || | ||||||| ||| | ||| |||||||| Sbjct 2134 GCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAAGATGGG 2192 Query 19203 CAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTCCTCGATAAAGC--CATG 19260 ||||| |||||||| || || || || || || ||||| | | || || || | || Sbjct 2193 GAATGTGATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGA-AAGGCTGCTTG 2251 Query 19261 ACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCAGCATCGCT 19320 | | | | | || | ||||| ||| | || | ||||| ||||| | || | Sbjct 2252 -CGATGAAAACCCCGGTAATGTTCCCCGGACAGGAACTGGACAAAGCGATCGAC--CGGT 2308 Query 19321 GCAGC-CAACCGATTCGTAAATAGAATAAGGGGAGGG-----ATGGATATAGGTTACTGG 19374 | | ||| || ||| || ||| || | | | || ||||| | | ||| Sbjct 2309 CCTCCGCAA---ATCTGTACAT-GAAAAACCTGCGCGCGAAAATAGATATCCCTGAGTGG 2364 Query 19375 CGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCG-AGATGAATGTCGAGCC 19433 || || ||||||||||| | | || ||||| | || | ||| | | ||| ||| Sbjct 2365 CGCACTCATGATTTCAGGCGCTCACTGGTTACGAACTTATCAGGAGAAGG-TATCGTGCC 2423 Query 19434 TCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAATAA 19493 || || || || ||||| || ||||| || |||||| ||||| | | || || || Sbjct 2424 CCACGTCACCGAAAATATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGATTTATAACAA 2483 Query 19494 ACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATTGTTCTG 19553 ||| |||||| | || | ||||||||||| ||||||||| ||||||||||| | | || Sbjct 2484 ACATGACTGGCTTGATGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAAAGTCCTGTG 2543 Query 19554 GCAC 19557 |||| Sbjct 2544 GCAC 2547 >seq259424 Length=1118 Score = 84.2 bits (92), Expect = 5e-12 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 28921 CTGTATGAAGAGCTTATCGGAGCAGATTTAACGAAAAATCAGAGCAAGGTTGCCCACGCC 28980 || ||||| || || || || || | |||| |||||| |||||| || |||||| Sbjct 1042 CTTTATGAGGAACTGATAGGGGCTAACCTAACTCGCAATCAGGCCAAGGTGGCGCACGCC 983 Query 28981 ATATGCCGTAAAACATACGGCTACGGTAAAAAGATGGATCGCATCTCTGATAGTCAGTTA 29040 |||| ||||||||||| |||| || |||||||| ||||| | ||||| |||||| Sbjct 982 GTATGTCGTAAAACATATGGCTTTAAAAAGAAGATGGACCGCATAGCAGATAGCCAGTTA 923 Query 29041 GCTCAAATTACCAGGCTGCCAAGACAGAAGGTAAACAAGGCCAAGAATGAGCTTATCGCG 29100 || | ||| ||| | ||| || | ||||| || || || || | || | Sbjct 922 GCCGAGATTTGCAGAATCAGTAGATCCAAAGCAAACATTGCTAAAAACGACTTGATTTCA 863 Query 29101 ATGAAGGTTATCCTTCGCGAAGGCCAGCAAATCGGGCCTAACAAGAACATCGAGGAATGG 29160 ||||| ||| | || |||||| ||| || || ||||||||||| | || ||| Sbjct 862 ATGAATGTTTTACTCAAAGAAGGCTCAAGAATTGGTCCGAACAAGAACATAGCTGAGTGG 803 Query 29161 C 29161 | Sbjct 802 C 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123118569715808