Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq1462 109 1e-18 seq81762 91.5 3e-13 seq366053 86.0 1e-11 seq255299 86.0 1e-11 >seq1462 Length=4781 Score = 109 bits (120), Expect = 1e-18 Identities = 225/335 (67%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 128734 CCAATGTGGCATTTGGAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAA 128793 || |||||||| |||||| |||||| | |||| ||||||||||| || |||| Sbjct 1336 CCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAA 1395 Query 128794 TTTAACCGAGTAAGACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGA 128853 |||||| || | || || || || || | |||||||| || | |||||||| Sbjct 1396 GGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAACGT 1455 Query 128854 TTGATTGATGGAAAAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGAT 128913 || | | || || || | | || || ||| ||||| || | ||||| ||| Sbjct 1456 CTGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCAGGGCTATACGAT 1515 Query 128914 GCATTTTGTGCTGATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAA 128973 || || | ||||| |||| ||| ||||||||||| || | | |||| ||| ||||| Sbjct 1516 GCCTTCTTCGCTGACCAAGCAGAGTTTGAACGTCTTTACACTCAGTACGAAGCGGATGAT 1575 Query 128974 ACTATTCGTAGGAAAACTATGCCAGCGATTGAAGCATTTAGTCATCTAATACAAGAGCGT 129033 ||||||||| | ||| || ||| |||| ||| | | || ||||| ||| Sbjct 1576 TCTATTCGTAAGCAAAAAATTAAAGCCGTTGATCTGTTTGCCCTAATGATGCAAGAACGT 1635 Query 129034 GCAGAAACTGGCCGCATTTATATTCAGAATATTGA 129068 || |||||||| |||||||| || || |||| Sbjct 1636 GCTTCGACTGGCCGTATTTATATCCAAAACGTTGA 1670 >seq81762 Length=32688 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 179335 GGAAGGATGGCCGAGTGGTTTAAGGCACTGGTCTTGAAAACCAGCAATCCGAAAGGGTTC 179394 ||||| ||||||||||| | ||||||| ||||||||||||| || | |||| |||| Sbjct 1003 GGAAGCGTGGCCGAGTGGCTGAAGGCACCGGTCTTGAAAACCGGCGACGGGAAACCGTTC 944 Query 179395 TAGAGTTCAAATCTCTATCCTTCCACCA 179422 |||||||| |||||||| ||||||||| Sbjct 943 TAGAGTTCGAATCTCTACGCTTCCACCA 916 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 179335 GGAAGGATGGCCGAGTGGTTTAAGGCACTGGTCTTGAAAACCAGCAATCCGAAAGGGTTC 179394 ||||| ||||||||||| | ||||||| ||||||||||||| || | |||| |||| Sbjct 1335 GGAAGCGTGGCCGAGTGGCTGAAGGCACCGGTCTTGAAAACCGGCGACGGGAAACCGTTC 1276 Query 179395 TAGAGTTCAAATCTCTATCCTTCCACCA 179422 |||||||| |||||||| ||||||||| Sbjct 1275 TAGAGTTCGAATCTCTACGCTTCCACCA 1248 >seq366053 Length=223 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023 ||||||| ||||||||||||| || | ||||||||||| ||||||||| ||||||| ||| Sbjct 150 CCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCC 209 Query 179024 AGTAGGG 179030 |||||| Sbjct 210 TGTAGGG 216 >seq255299 Length=12406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023 ||||||| ||||||||||||| || | ||||||||||| ||||||||| ||||||| ||| Sbjct 3367 CCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCC 3308 Query 179024 AGTAGGG 179030 |||||| Sbjct 3307 TGTAGGG 3301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101901768311779