Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq494847 147 3e-30 seq63939 140 5e-28 seq105800 118 2e-21 seq2677 84.2 3e-11 >seq494847 Length=1062 Score = 147 bits (162), Expect = 3e-30 Identities = 199/275 (72%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAG-TGCGGATTTTTTCCTCGGCGTGCCGTTCAACAT 198387 || || || || || ||||| ||| |||| || | ||||||||| |||||||||| || Sbjct 289 CTCTCCTGCCAACTGTATCAGCGCTCCTGCG-ATATCTTCCTCGGCCTGCCGTTCAATAT 231 Query 198388 CGCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGA 198447 ||| ||||| || || ||||| ||| | ||||||||| || ||| ||| || Sbjct 230 CGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGA 171 Query 198448 TTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCT 198507 ||| | ||||| || || || || ||||| ||| || || ||||||||| | || Sbjct 170 TTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCT 111 Query 198508 CCAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATC 198567 ||||||||||| || ||| | | ||||| ||||| |||||||| || ||||| || Sbjct 110 GCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTC 51 Query 198568 TATCTTCGATTATAAATTCGAAGATTTTGAGATCG 198602 ||||||||| ||| || || || || ||||||| Sbjct 50 TATCTTCGACTATCGCTTTGATGACTTCGAGATCG 16 Score = 114 bits (126), Expect = 2e-20 Identities = 201/287 (70%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTT-AAAGGCGAT 197671 ||||||| ||||| | | | |||||| || | || || |||| || | ||| || Sbjct 762 TGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCAGGG-CACGCCCAAAAATGAC 704 Query 197672 CGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAA 197731 || || ||||| || ||||| || | ||||| | ||||||||||| || ||| | Sbjct 703 CGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGAC 644 Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 ||||| ||| | ||||| || ||||| ||| |||| ||||| || ||||| |||||| Sbjct 643 GGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCTG 584 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCT---GGAAGATAACGGCGTTACCATT 197848 |||||||||| || || || |||| | || || |||| |||| || || | || Sbjct 583 TGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAA-GGTGT--CGATC 527 Query 197849 TGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 ||| |||||| |||||||| || |||| || || | ||||| Sbjct 526 TGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGG 480 >seq63939 Length=2243 Score = 140 bits (154), Expect = 5e-28 Identities = 203/284 (71%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGC-GAT 197671 ||||||| ||||| || | ||||| | | ||| |||| || || | ||| || || Sbjct 1901 TGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGG-CACGCCAAAAGCTGAC 1959 Query 197672 CGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAA 197731 ||||| || || || |||||||| | ||||| | |||||||||||| | ||| | Sbjct 1960 CGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAGGAT 2019 Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 ||||| ||| | ||||| || |||||| || | || || ||||| ||||| |||||| Sbjct 2020 GGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGCTG 2079 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 ||||| || | || |||||||||| | ||||| |||| ||| ||| |||| ||| Sbjct 2080 TGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTGG 2139 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 |||||| ||||| ||||| | || ||||| ||||||| Sbjct 2140 GATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGG 2183 >seq105800 Length=3879 Score = 118 bits (130), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 197669 GATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGT 197728 |||||||| || ||||| |||| ||| ||||| || |||||||||||| || Sbjct 2663 GATCGTACGGGCACAGGCACGCGCAGTGTATTTGGCTATCAAATGCGTTTTGATCTG--- 2719 Query 197729 AAA---GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 ||| || || ||||| ||||| || || || | || |||| || |||||||||||| Sbjct 2720 AAAGCTGGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCATGAA 2779 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 || | |||||| | | || || || |||| || ||| || |||| || || |||| | Sbjct 2780 CTAATCTGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGTTAGC 2839 Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGG 197905 |||||| || ||| |||||||| ||||| | || || | ||||| |||||||| Sbjct 2840 ATTTGGGATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGGCTCACAATGG 2899 >seq2677 Length=2322 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 197668 CGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCG 197727 ||| ||||| || || || || | || | || || | ||| ||||| || ||| ||| Sbjct 2093 CGACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCA 2152 Query 197728 TAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACT 197787 | || ||||| |||||||| || || ||| ||| ||||| || ||||| || || || Sbjct 2153 ACAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCT 2212 Query 197788 GCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCAT 197847 ||||||||| | | || || ||||| | | || || |||| ||| || || || Sbjct 2213 GCTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGAT 2272 Query 197848 TTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGT 197896 |||| || ||| ||| || | || ||| | || || | |||||| Sbjct 2273 TTGGGATGAATGGGCAGACGAGCAGGGCAACTTAGGTCCGGTTTATGGT 2321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 764393630022680