Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq153502 140 9e-29 seq497144 131 4e-26 seq136258 122 2e-23 >seq153502 Length=4143 Score = 140 bits (154), Expect = 9e-29 Identities = 182/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||||||| |||| || ||||||| || || || || | || | | | || || Sbjct 2215 GATCCAGAAGTCCGGTATATGCCAAATGGAGGGGCTGTGACAAACATTACACTGGCAACC 2156 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 ||||||||||| ||||| ||||| || || ||||| || ||||||||||| Sbjct 2155 TCTGAAAGCTGGCGTGATAAGCAAACCGGTGAAAATAAAGAGATTACTGAATGGCACCGT 2096 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 ||||| | |||||||| | |||||| ||||| ||||||| ||||| ||||| || Sbjct 2095 GTTGTGTTGTTCGGTAAATTAGCAGAAGTTGCTGGCGAATATCTGCGTAAAGGCTCTCAG 2036 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | || ||||| ||||| ||||| |||||||| ||||| | |||| ||||| Sbjct 2035 GTTTATATCGAAGGTCAACTGCGTACGCGCAAATGGCAAGACCAAGGTGGCCAAGATCGT 1976 Query 41445 TACACCACTGAA 41456 |||||||| ||| Sbjct 1975 TACACCACCGAA 1964 >seq497144 Length=1636 Score = 131 bits (144), Expect = 4e-26 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 || || ||| | || |||||||| | ||||| || ||||| || | | | || || Sbjct 1158 GACCCGGAAGTTCGCTACATGCCGAATGGCGGTGCCGTTGCCAACATCACTCTGGCTACC 1217 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | ||| |||| || || |||||||| | ||||| |||| |||||||||||| Sbjct 1218 TCCGAATCCTGGCGCGACAAGCAGACCGGCGAAACCAAAGAGAAAACTGAATGGCACCGC 1277 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 ||||| | ||||| |||||||| ||| | || | ||||||||||| ||||| || Sbjct 1278 GTTGTGCTGTTCGGCAAGCTGGCTGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAG 1337 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | || |||||| |||| || ||||||||| ||||||||||||||||| Sbjct 1338 GTTTATATCGAAGGCGCACTGCAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAG 1397 Query 41445 TACACCACTGAA 41456 |||||||| ||| Sbjct 1398 TACACCACCGAA 1409 >seq136258 Length=1331 Score = 122 bits (134), Expect = 2e-23 Identities = 182/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||| ||| | ||||| ||||||| || ||||| ||||| || | | | || || Sbjct 309 GATCCGGAAGTACGTTATATGCCAAATGGTGGCGCTGTTGCCAACATTACGCTGGCTACG 250 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | ||||||||| || || ||||| || || ||||| || ||||||||||| Sbjct 249 TCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTGAATGGCACCGT 190 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG-TAGCAA 41383 || || | || || || ||||| ||| | || | ||||||||| ||||| | ||| Sbjct 189 GTGGTTCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCGCA- 131 Query 41384 GGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCG 41443 ||| | || |||||| ||||| || |||||||||||||| |||| |||| || || Sbjct 130 GGTCTATATCGAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCG 71 Query 41444 CTACACCACTGAAATC 41459 |||||||| ||| || Sbjct 70 TTACACCACCGAAGTC 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132419900272056