Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq121512 159 4e-34 seq170665 93.3 5e-14 seq271511 91.5 2e-13 seq75153 84.2 3e-11 >seq121512 Length=219671 Score = 159 bits (176), Expect = 4e-34 Identities = 315/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 212589 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 212648 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | | ||| | | | || ||| ||| | |||| || || Sbjct 212649 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAG-CGCCATGAGCAGGCG 212707 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| || Sbjct 212708 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 212767 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| ||| |||| || |||| |||||||| || || |||||| || Sbjct 212768 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 212827 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | ||| || |||| | | ||| | | ||| | || ||| || ||| || Sbjct 212828 GACGCGGGACTC-GT-CCAGCT-TGCCGCGGAGGATGTCGTAGAGGAGG--CA-GGCGAA 212881 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 212882 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 212941 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 212942 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 213001 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| || ||| Sbjct 213002 GACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 213035 >seq170665 Length=56631 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 42215 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 42274 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | |||| |||||| || | | ||||| |||||||||||||||| || ||||||| Sbjct 42275 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 42334 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCGTTGCTTACCGACG 14242 || || || | |||||| ||| || ||| ||| | | | |||| | || || Sbjct 42335 GTCTGCTCCCTTTCATCGTTCCCA---CCACCGATACCTGTTCCTCTTTGCCTCCCAACA 42391 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGA 14300 || ||||||||||| | || || || || || ||| || ||| |||| |||| Sbjct 42392 GCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGAAGA 42449 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || || | |||||| ||||| |||||||||||||| || Sbjct 42450 GATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 42495 >seq271511 Length=5505 Score = 91.5 bits (100), Expect = 2e-13 Identities = 276/418 (66%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077 |||| ||| |||||||| ||| || ||| || | || ||| |||||||| ||| Sbjct 4246 ATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCGTCCT 4187 Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 || || || || || ||| || | ||| ||||| || || ||||| || | || Sbjct 4186 GGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTTGCGGCGATAACGATAATA 4127 Query 14138 CCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCG 14194 || |||||| || || |||||||||||| || | || || | || || || Sbjct 4126 CCT---TCGTTACCTTCGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTGCTCA 4070 Query 14195 CGTTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 14253 ||||| |||| || || || ||| || | || || |||||| ||||| || || Sbjct 4069 CGTTCGTCATGTCCACCGCCTAA-ACCGGCGCCACGCTGACGACCGACTGCGTCGATCTC 4011 Query 14254 ATCGATGAAAACGATACATGGTT--GATTTTCACGGGCAACTTCAAAGATATCTCGCACT 14311 |||||| || | ||| || || | |||| ||| ||| || || || ||||| Sbjct 4010 ATCGATAAAGATGATGCACGGAGCCGCTTTTTT--GGCCTGTTCGAACATGTCACGCACA 3953 Query 14312 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 14370 | ||||||||||| |||||||| |||||||| | | ||| | || | | ||| Sbjct 3952 CGGGATGCACCGACACCGACAAACATTTCCACAAAGTCAGAACCGG-AGATGGTAAAGAA 3894 Query 14371 GGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || || || | |||||| || || ||| || || | ||| || || || || ||| Sbjct 3893 AGGCACCTTCGCTTCACCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTACCCGGT 3836 >seq75153 Length=68690 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || |||||||| || ||||| || || || || ||| || | ||| Sbjct 40142 ACGGTGACCTGCCGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 40083 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 40082 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 40025 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCAC 14225 | | || || || ||||| || || | ||||| ||| | | ||| ||| |||| Sbjct 40024 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCCCACCCATTCCA---GCAC 39968 Query 14226 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG 14274 || ||| | |||||||||||||| ||||||||||| ||||| || || Sbjct 39967 CACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGG 39919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614576002012760