Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq121512 141 1e-28 seq271511 109 6e-19 seq170665 104 3e-17 seq175410 102 9e-17 seq75153 91.5 2e-13 >seq121512 Length=219671 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 213035 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 212976 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 212975 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 212916 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 212915 GCTCATCTCCCGCGACGAGGGCCTGCAC 212888 >seq271511 Length=5505 Score = 109 bits (120), Expect = 6e-19 Identities = 305/460 (66%), Gaps = 20/460 (4%) Strand=Plus/Minus Query 9478 GATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACC 9537 ||||| ||| || || |||||| ||| || | || | || ||| |||||||| || Sbjct 4247 GATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCGTCC 4188 Query 9538 TGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAAT 9597 |||||| || ||||| || || | ||| || || || |||||||| || | ||| Sbjct 4187 TGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTTGCGGCGATAACGATAAT 4128 Query 9598 ACCT--GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCC 9655 |||| ||| | || | |||||||||||||| || | ||||| | || || || Sbjct 4127 ACCTTCGTTACCTT--CGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTGCTCA 4070 Query 9656 CGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9714 ||||| |||| || || || ||| || | || || || || || || ||||| Sbjct 4069 CGTTCGTCATGTCCACCGCCTA-AACCGGCGCCACGCTGACGACCGACTGCGTCGATCTC 4011 Query 9715 ATCAATGAAGACGATGCATGG------TTGATTTTCGCGAGCGACTTCAAAGAGATCCCG 9768 ||| || |||| |||||| || || |||| || | ||| || | || || Sbjct 4010 ATCGATAAAGATGATGCACGGAGCCGCTT--TTTTGGCCTG----TTCGAACATGTCACG 3957 Query 9769 TACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GA 9827 ||||| || || ||||| |||||||| |||||||||| | ||| | || | | Sbjct 3956 CACACGGGATGCACCGACACCGACAAACATTTCCACAAAGTCAGAACCGG-AGATGGTAA 3898 Query 9828 TGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTG 9887 ||| || || || | |||||| ||||| ||| || || | || ||||| ||||| | Sbjct 3897 AGAAAGGCACCTTCGCTTCACCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTACCCG 3838 Query 9888 GCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | ||| | | || | ||| ||||||||| |||| Sbjct 3837 GTGGCCCCACCATCAGAACGCCTTTTGGAATCTTACCGCC 3798 >seq170665 Length=56631 Score = 104 bits (114), Expect = 3e-17 Identities = 199/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 42215 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 42274 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 42275 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 42334 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 42335 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 42388 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| || || ||||| || ||| || | | | |||| | Sbjct 42389 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 42446 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 42447 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 42495 >seq175410 Length=55385 Score = 102 bits (112), Expect = 9e-17 Identities = 280/420 (67%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 9475 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9534 || ||||| ||| ||||| |||||| || ||| | || | || ||| ||||| || Sbjct 25251 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAACG 25310 Query 9535 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9594 || ||||| || ||||| || || | ||| || || || |||||||| || | Sbjct 25311 GCCCGGACGCAGCAGCGCTGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 25370 Query 9595 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9651 || ||| ||||| || || || |||||||| || | ||||| | || || Sbjct 25371 GATGCCT---TCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAATGTCTG 25427 Query 9652 TTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9710 || || ||||| | | | || ||| |||| ||| || || |||||||| | Sbjct 25428 CTCACGCTCATCGTGACCACCACCTAA-ACCGGCACCGCGCTGACGGCCAACGGCATCGA 25486 Query 9711 TCTCATCAATGAAGACGATGCATGGTT-GATTTTCGCGAGCGACTTCAAAGAGATCCCGT 9769 ||||||| || |||| |||||| ||| | |||| ||| ||| || | || || Sbjct 25487 TCTCATCGATAAAGATGATGCACGGTGCGGCTTTCTT-AGCCTGTTCGAACATGTCGCGC 25545 Query 9770 ACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GAT 9828 ||||| || || |||||||||||||| || || |||| | ||||| || | | Sbjct 25546 ACACGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAA 25604 Query 9829 GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || || || | |||||| ||||| ||| || || || || ||||| ||||| || Sbjct 25605 GAAAGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 25664 >seq75153 Length=68690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 40130 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 40071 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 40070 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 40013 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| ||||||| || ||| | || Sbjct 40012 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCAGCACCACGCTGCCTCCC 39955 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 ||||| ||||||||||| |||||||||||||| || Sbjct 39954 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGG 39919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579621099502040