Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq121512 197 2e-45 seq377828 86.0 7e-12 seq263470 86.0 7e-12 >seq121512 Length=219671 Score = 197 bits (218), Expect = 2e-45 Identities = 512/757 (68%), Gaps = 30/757 (4%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||||||||| || |||||| || || ||||||||||| || || || || | Sbjct 213330 ACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCG 213271 Query 59737 TGATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGT 59793 || | || || | | | | | | | ||| || || ||| | ||||||||| || Sbjct 213270 TGCTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGG 213214 Query 59794 CGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852 | ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | Sbjct 213213 CCTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTC 213155 Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912 ||||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 213154 ATCGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACC 213095 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCAT 59970 |||||| || | || || || ||||| | | ||||| || | | ||||| Sbjct 213094 ATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGGGGAGCGC 213035 Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 || || | || || | || || || ||||| || || ||||||||||| ||||| | Sbjct 213034 --TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 212977 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 |||| || || ||||||||||| ||||| || |||||||||||||| | |||||||||| Sbjct 212976 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACG 212917 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA- 60148 |||| || ||||| ||||||||||| || || || || || | ||||| ||| Sbjct 212916 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACAT 212859 Query 60149 CCT-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTG 60204 ||| || || || | ||| | | || | |||| || || | || | || | Sbjct 212858 CCTCCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTGTCCGAGGCCGTG-G 212803 Query 60205 AAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTG 60264 | | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 212802 ACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCG 212743 Query 60265 GAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAG 60321 |||| |||||||| |||| ||||| |||||| |||||||| | | | Sbjct 212742 ACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTG-C 212684 Query 60322 AAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 ||| | | | ||| || | ||||| ||||||||||||||| ||||||| || | | Sbjct 212683 AAGAAGC--TGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGG 212626 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||||||||| |||||||| ||||| || || Sbjct 212625 GCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 212589 >seq377828 Length=228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 166332 TGGAAAATCACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACA 166391 ||||||| |||||||||||||| || ||||||||||||||||| || ||| || || Sbjct 61 TGGAAAAGAACGTCATCGAGATCGCGCCGCTGGCGTACATGCGCGGGCGCACGCTCAACG 120 Query 166392 ACGCCTGGATTATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTC 166451 | || | | ||| ||| ||| ||||||| | || | |||||||||||| | | Sbjct 121 ATGCGTTCGTGATCCTGGACGAGGCGCAGAACACCACCATCGAGCAGATGAAGATGTTCC 180 Query 166452 TGACCCG 166458 ||||||| Sbjct 181 TGACCCG 187 >seq263470 Length=1478 Score = 86.0 bits (94), Expect = 7e-12 Identities = 286/443 (65%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||| |||| |||| ||| || || |||||| |||||||||||||| |||| | Sbjct 498 CCATTCCTGGTCCGACTCGACACGCTTCATGAACAGGTCCGGGATCCAGTTGGCCAGGTT 557 Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475 |||| | | ||| | |||||||| ||| |||||||||||| || ||| Sbjct 558 CAGGTTGTGCGCACGGCGCGATTCGTCGCCGGTGTTGTCACGCAGCTCGAGGAAATCCTC 617 Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 ||||||||||||||| | ||||| || | | | ||||||||||| |||||| Sbjct 618 GATGTCGGCGTGCCAGGTTTCCAGGTACACACAGGCTGCGCCCTTGCGCTT---GCCGCC 674 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGG-----AGCATGGGCACGATGCCG 79590 |||||| || | |||| | | ||| | || ||| |||||||||||| Sbjct 675 CTGGTTCAC---CGCGGCCACG--GACGAATCCATGGTCTTCAGCCACGGCACGATGCCG 729 Query 79591 TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG 79650 | || | |||||| || ||||| | | ||| | || || | | | | || | Sbjct 730 TTGGAGTGGCCGTTGGTGGACTTGATGAGCGAACCACGCGAACGCACGCGGGTGTAGCTG 789 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 | |||||||| ||||| |||| || | || ||| || | | | |||||| Sbjct 790 ACGCCGATGCCGCCGGAGAACTTCGACAGCTGGGCGATGTCGCCGTACTTGGAGTAGATC 849 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTC 79770 || | |||||| | | | | | | ||||||||| |||| ||| || | | Sbjct 850 GATTCCAGCGAGTCCTGCGGCGAATCCAGCAGGAAGCACGAGGACAGCTGCTCGTGGGTG 909 Query 79771 GTACCGGCGTTGAAGAGGGTCGG 79793 || |||| |||||| |||||||| Sbjct 910 GTGCCGGAGTTGAACAGGGTCGG 932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545101861260240