Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq79071 210 2e-49 seq222524 187 3e-42 seq65234 170 2e-37 seq209331 132 5e-26 seq213894 125 8e-24 seq1462 113 5e-20 seq260686 105 7e-18 >seq79071 Length=852 Score = 210 bits (232), Expect = 2e-49 Identities = 157/184 (85%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 3806 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 3865 ||| | ||| |||||||||||||| | || |||||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 3866 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 3925 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 3926 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 3985 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 3986 TTCA 3989 |||| Sbjct 361 TTCA 364 >seq222524 Length=8439 Score = 187 bits (206), Expect = 3e-42 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 3813 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 3872 || |||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 4032 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 4091 Query 3873 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 3932 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 4092 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 4151 Query 3933 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 3988 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 4152 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq65234 Length=1614 Score = 170 bits (188), Expect = 2e-37 Identities = 306/447 (68%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552 ||| || | ||| | || ||| ||||||| | |||||| | | |||||||| | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672 ||| || || || || | || |||||| || ||||| ||||| ||||| | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732 ||| ||||||||||| || ||||| | |||| || | | || | ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 81733 AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792 ||| ||||| ||| ||||||| || ||||| || |||| ||||| ||||| ||||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 81793 TGAAGCAGAAGCTTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGA 81852 || | || | |||||| || || || ||| || |||||| | || || || Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 1008 Query 81853 ACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 81912 |||||| || ||||| || || | || | |||||| || || || | || || | Sbjct 1009 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 1068 Query 81913 TCGAGTAGATACTGCTTCATAAAAACG 81939 ||| || | ||| | |||||| || Sbjct 1069 AAAAGTGGAAATTGCATTATAAAAGCG 1095 >seq209331 Length=9407 Score = 132 bits (146), Expect = 5e-26 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 3818 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 3877 ||| ||||| || | || || || |||||||||| |||||| ||||||||||| || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 3878 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 3937 || |||||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 3938 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 3988 ||| ||||||| || |||||||||||| ||||| ||||| ||||| Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTC 485 >seq213894 Length=28734 Score = 125 bits (138), Expect = 8e-24 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 3806 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 3865 ||||| |||| ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 3866 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 3925 ||| ||||| || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 3926 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 3985 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 3986 TTCA 3989 |||| Sbjct 8809 TTCA 8806 >seq1462 Length=4781 Score = 113 bits (124), Expect = 5e-20 Identities = 284/432 (66%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 81509 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 81568 || || || ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 1430 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 1371 Query 81569 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 81628 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 1370 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 1311 Query 81629 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 81688 || | || || || || || ||||| || || ||||| || ||||| | || || ||| Sbjct 1310 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATA 1251 Query 81689 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCT 81748 ||| |||||| ||||||| | || ||| |||||||| || Sbjct 1250 CAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCCA 1191 Query 81749 ACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAATTGAAGCAGAAGCTTTA 81808 | || || || || || ||||||| |||| |||| ||| || | | ||||| Sbjct 1190 GCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGCG 1131 Query 81809 TTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGAACTAAACTGTCGAGTC 81868 || || || | || ||| ||| || |||| |||||||| || || || |||||| Sbjct 1130 TTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGTC 1071 Query 81869 GGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGCT 81928 || || || |||||||| || || || || || ||||| | || || || || Sbjct 1070 GGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCA 1011 Query 81929 TCATAAAAACGA 81940 |||||||| ||| Sbjct 1010 TCATAAAAGCGA 999 >seq260686 Length=13603 Score = 105 bits (116), Expect = 7e-18 Identities = 273/411 (66%), Gaps = 4/411 (1%) Strand=Plus/Minus Query 81503 TTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 81562 |||||||| || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 5584 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 5525 Query 81563 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 81622 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 5524 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 5465 Query 81623 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 81682 ||||| || | || ||||| || || || || || || ||||| || || || | || Sbjct 5464 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 5405 Query 81683 GGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATC 81742 ||||| || || ||| | ||||||| || ||| || ||||| || Sbjct 5404 GGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATG 5345 Query 81743 ATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAATTGAAGCAGAA 81802 ||| ||||||| || || || || || | ||||| || | ||||| | || | | Sbjct 5344 CGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGA 5286 Query 81803 GCT-TTATTAATTGACTTCAATG-AATCACCAGCTTCAATAACAACGCATGAACTAAACT 81860 | | ||||| || |||| | || || ||||| | ||||| || || |||| Sbjct 5285 GGTGGCGTTAATGGA-ATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACT 5227 Query 81861 GTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCT 81911 | || ||||| || || || | |||||| || || |||| ||||||| Sbjct 5226 GGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532423077025320