Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq136258 138 4e-28 seq497144 123 1e-23 seq153502 120 1e-22 seq410746 111 6e-20 seq20418 84.2 8e-12 >seq136258 Length=1331 Score = 138 bits (152), Expect = 4e-28 Identities = 228/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 7279 GGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATG 7338 || ||||||||||| ||||| || || || | ||| || |||||| || || ||| Sbjct 348 GGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATG 289 Query 7339 CCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAG 7398 || || || || || ||||||| || || || || || |||||| |||||| Sbjct 288 CCAAATGGTGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAG 229 Query 7399 CAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTG 7458 |||||||| | | | || | | || | ||||| ||||| | || || ||| Sbjct 228 CAGACCGGTGAAAACAAAGAGATCACTGAATGGCACCGTGTGGTTCTGTTTGGCAAACTG 169 Query 7459 GCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTG 7518 || || |||| || || |||||| || || || |||||||| |||||||| ||| Sbjct 168 GCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCGCAGGTCTATATCGAAGGCCAGCTG 109 Query 7519 CGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTC 7578 |||||||| || ||||||| ||||| |||||||| || ||||||||||| || | || Sbjct 108 CGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACCGAAGTCGTGGTT 49 Query 7579 GACATGCACGGACAGATGCAGATGCTTGG 7607 || | ||| ||||||||||| || Sbjct 48 AACGTTGGCGGTACCATGCAGATGCTGGG 20 >seq497144 Length=1636 Score = 123 bits (136), Expect = 1e-23 Identities = 230/336 (68%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| || |||||||| ||| | || || || | || ||||||||| |||||| Sbjct 1116 AGAGGCGTAAACAAAGTAATTTTAGTCGGAAATCTGGGGCAGGACCCGGAAGTTCGCTAC 1175 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||| || ||| ||| || |||||||||| || || ||| ||| |||| ||| Sbjct 1176 ATGCCGAATGGCGGTGCCGTTGCCAACATCACTCTGGCTACCTCCGAATCCTGGCGCGAC 1235 Query 7396 AAGCAGACCGGCCAGCAAC--AGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTC 7453 |||||||||||| | ||| | || | || | |||||||| ||| | ||||| Sbjct 1236 AAGCAGACCGGC--GAAACCAAAGAGAAAACTGAATGGCACCGCGTTGTGCTGTTCGGCA 1293 Query 7454 GCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCA 7513 ||||| || | ||||| || |||||||| || || || ||||| || |||||||| Sbjct 1294 AGCTGGCTGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATCGAAGGCG 1353 Query 7514 GCCTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAA 7573 |||| ||||| || ||| | |||| ||| || ||||||||||| || Sbjct 1354 CACTGCAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAAGTTG 1413 Query 7574 TCGTCGACATGCACGGACAGATGCAGATGCTTGGCG 7609 | || || | ||| ||||||||||| |||| Sbjct 1414 TGGTTAACGTTGGCGGCACCATGCAGATGCTGGGCG 1449 >seq153502 Length=4143 Score = 120 bits (132), Expect = 1e-22 Identities = 225/331 (68%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 7279 GGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATG 7338 || || |||||||| ||||| || ||||| | ||| || || ||| ||| || ||| Sbjct 2254 GGCGTAAACAAAGTGATTCTTGTCGGTAATTTGGGTCAAGATCCAGAAGTCCGGTATATG 2195 Query 7339 CCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAG 7398 || || || || ||||| ||||| || || || ||| || |||||| || ||| Sbjct 2194 CCAAATGGAGGGGCTGTGACAAACATTACACTGGCAACCTCTGAAAGCTGGCGTGATAAG 2135 Query 7399 CAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTG 7458 || ||||| | | | || | || | ||||| || ||||| |||||| | Sbjct 2134 CAAACCGGTGAAAATAAAGAGATTACTGAATGGCACCGTGTTGTGTTGTTCGGTAAATTA 2075 Query 7459 GCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTG 7518 || || | || ||||| || ||||| || || || ||||| || ||||||| ||| Sbjct 2074 GCAGAAGTTGCTGGCGAATATCTGCGTAAAGGCTCTCAGGTTTATATCGAAGGTCAACTG 2015 Query 7519 CGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTC 7578 || || ||||| ||||| | || | ||||| || || ||||||||||| || | || Sbjct 2014 CGTACGCGCAAATGGCAAGACCAAGGTGGCCAAGATCGTTACACCACCGAAGTGGTTGTT 1955 Query 7579 GACATGCACGGACAGATGCAGATGCTTGGCG 7609 || | ||| |||||||||||||||| Sbjct 1954 AACGTTGGCGGTACCATGCAGATGCTTGGCG 1924 >seq410746 Length=249 Score = 111 bits (122), Expect = 6e-20 Identities = 130/169 (77%), Gaps = 5/169 (3%) Strand=Plus/Plus Query 7344 CGGCAATGCGGTGACCAACATCACCCTCGCCACCAGC-GAGAGCTGGAAGGACAAGCAGA 7402 ||||| || |||||||| |||| ||| ||||||| | | | || | |||||| || || Sbjct 37 CGGCATGGCCGTGACCAAGATCAGCCTGGCCACCACCAGCGTGC-GCAAGGACC-GC-GA 93 Query 7403 CCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGG 7462 | ||| | ||||| ||| |||| | ||||| ||| |||||||| || | | Sbjct 94 C-GGCAACACCCAGGAGCGCACCGAATGGCACCGGGTGACCTTCTTCGGCAAGCTCGGCG 152 Query 7463 AGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGG 7511 ||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 153 AGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTGGAAGG 201 >seq20418 Length=11049 Score = 84.2 bits (92), Expect = 8e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 7432 CACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGT 7491 ||||| || ||||||||||| || ||||||||||| |||||||||||| ||||| Sbjct 7427 CACCGAGTCGTGTTCTTCGGGAAGCTCGCGGAGATCGCTGGCGAGTACCTGAAGAAGGGC 7486 Query 7492 TCCCAGGTCTACGTCGAAGGC 7512 || |||||||||||||| ||| Sbjct 7487 TCGCAGGTCTACGTCGAGGGC 7507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193664263199362