Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq123396 410 5e-110 seq201909 338 2e-88 seq449472 158 5e-34 seq369136 138 4e-28 seq147806 113 2e-20 seq189010 109 2e-19 seq286911 102 3e-17 seq462907 98.7 4e-16 seq203346 86.0 2e-12 >seq123396 Length=12579 Score = 410 bits (454), Expect = 5e-110 Identities = 843/1228 (69%), Gaps = 33/1228 (3%) Strand=Plus/Plus Query 13459 CCTTTAGGCCAAACCCCGAACTTCTCCTTGTAGGTATGAGCACACCATCCGTCACTCAGT 13518 || || ||||| | |||||||| ||| || | |||||||| |||||||| ||| | Sbjct 4099 CCATTTGGCCATTCTCCGAACTTATCCCTGAAAGTATGAGCGCACCATCCATCAGATAAA 4158 Query 13519 GGCTTACCTGTCGC---GTT-GCGGTAATTCTGATACCCCTTGATCTCGCTCCACCAACG 13574 |||||| | | || |||||| ||| ||||||||||||| |||||||| Sbjct 4159 TTCTTACCAC-CACTAAGTGCGCGGTAGCGCTGGTACCCCTTGATCTGACTCCACCATGA 4217 Query 13575 CTGTTTTTCCTCACGGGTGTA--TTC-GCGTTTCCCTTTGTTGACGCGTGAAAGCTTACG 13631 ||| || |||| ||| | || ||| | ||||| || | | || ||| | | || || Sbjct 4218 CTGCTTATCCTTGCGGCTATAGGTTCTGACATTCCCCTT-TAGGCG-GTGCA-GTTTGCG 4274 Query 13632 A-TCGCGATCTGTCGCCACGTCATCACCACCAAGAGGACGAAATCCACATTTGGGACACA 13690 | | | || || | |||| || ||||| | ||| |||||||| || || || | Sbjct 4275 GGTAGTG-TCCGTTTCTACGTTCTCTCCACCTACAGGCTTGAATCCACACTTCGGGCATA 4333 Query 13691 TATGCACGCCAGCAGGCTTCATGAAGTGGCATTTGGGGCATTCCCTGGGAAGTTTCTCAG 13750 || || ||||||||||||||||| ||||| | | || || |||| ||||| Sbjct 4334 CATATACCCCAGCAGGCTTCATGAAATGGCACTGCGAACACTCTTTGGGTTTCTTCTCGA 4393 Query 13751 CCTTAACC---TCACTCCCGCCAGCAGACGCTTTCATTCCGTCATTTTTTCC-CGGAAGT 13806 ||| | || || | || |||| | |||||| |||||| |||| || | |||| Sbjct 4394 TCTTCTCAGGTTCGCTACTACCTGCAGCTGATTTCATGCCGTCACTTTTGCCGCTCAAGT 4453 Query 13807 TCGTCATACTCGATATCCTCGGGGAAGCCCAGCCGATGAACCGTGCCGGAATGGTCGAAA 13866 ||||||||||||| || || ||| ||||||| || || | | ||| || || ||| Sbjct 4454 -CGTCATACTCGATGTCATCCGGGTAGCCCAGGCGGTGTATGCTACCGCTGTGATCAAAA 4512 Query 13867 ATCAATGCGCGTTTTTTACCAGACGCAGTACGTAACGCTCTCCCGATGCACTGCAACCAG 13926 |||| | | ||| || | || || || | | | || | ||| | |||| Sbjct 4513 ATCAGACAATGGTCTTTCCCTGGTGCCGTGCGGAGTCCGCGACCCAACACCTGAATCCAG 4572 Query 13927 CGGATTTCTGATTTGGTCGGACGGGCGTAGATCAGGCAGCGAACATCGCTGTCAAATCCC 13986 || ||||||||||| || |||||||| ||||| | ||| || |||||||||||||| || Sbjct 4573 CGCATTTCTGATTTTGTTGGACGGGCATAGATGATGCACCGTACATCGCTGTCAAAGCCT 4632 Query 13987 GCAACCAGTACGCCAACGTTGACAATTATTTTGGTCGCACCCTCTTCAAAACGGCGAATG 14046 || ||| || |||||||| || ||||| || || | |||| ||| || || |||| Sbjct 4633 GCGGTCAGCACACCAACGTTAACGATTATCTTCGTTACGCCCTGTTCGAAGCGATGAATA 4692 Query 14047 ATGTCCTGTCGTTCATCATGGGGGGTATCTGCCGTCATCACCTCTGC-GCCAATGCCAG- 14104 || | |||||||| | || || | | |||| | ||| || |||| | |||| Sbjct 4693 ATCATTCGACGTTCATCTGGCGGAGTGGCATCAATCATGATCTCCGCCGCCACT-CCAGC 4751 Query 14105 ACTGTAAAAACTCACGGGTAACAAAGTTCGCATGAGCCACATTCACGCAGAAGCAGATCG 14164 || || ||| |||| || | || ||||||| | || || |||||||| | | Sbjct 4752 ACGGTTAAA-CTCAGTCGTTATGAACCCGGCATGAGACTGGTTGACACAGAAGCAAACAG 4810 Query 14165 TCGGTAAATCCTCGCCATTCTCAAGCCAGTTGCTGACGATATCGCCAACCAGATCCGAAC 14224 | || |||||||| |||| ||||||||||||||||||||||| |||| | | | | Sbjct 4811 TTGGCCGGTCCTCGCCGTTCTGCAGCCAGTTGCTGACGATATCGCCCACCAAAGCGGCAT 4870 Query 14225 TCCCCATGATGGATGCGAGCTGTTCCTCGTTGTAATCCCGTCCAAATACGGTGTTACTGG 14284 ||||| || || | ||| || |||||||| || ||||||||| | | |||| Sbjct 4871 CACCCATAATCTCGGCCAACTGGTCTTCGTTGTAGTCGCGTCCAAATCCCGACAGGCTGG 4930 Query 14285 ---TTTTTACGCCAGCCAGATCAGGCATTGAGGGGGCAAAAAACTCATAATCGCTCAGAT 14341 ||||||| || || ||||| | | || || |||| || || || || | Sbjct 4931 AAGTTTTTACCCCTTTCAAGTCAGGTGTAGTCGGCGCGTAAAATTCGTAGGGACTAAGGT 4990 Query 14342 CACCAC-GCTGAATAAGTTCACGAATCGTTGTAGGCTTGATCAGGCATTCGTAGTACTTC 14400 ||||| ||| | | || || ||||| || || ||||| |||| ||||| |||| Sbjct 4991 CACCAATGCTTA-TCAGCTCTTTCATCGTGGTGGGTTTGATGAGGCGCTCGTAATACTGG 5049 Query 14401 CCCATCCAGGCTGCGAACGGGGTGCCGGAAAGCCCAAGAACCCTGATATCTTTGTCCCGG 14460 |||||||| | | ||| || || || || ||||| | ||| | || || ||| ||| Sbjct 5050 CCCATCCACGGCGAGAAAGGCGTTCCAGACAGCCCGACAACACGAATGTCGCGGTCGCGG 5109 Query 14461 ATAACCTCAAGTAACGCACGACGCTTCATGTGTGCTTCATCGATGATCAGCAGATCGATG 14520 |||| |||||| || ||||||||||||||||| |||||||||| || || || |||||| Sbjct 5110 ATAATCTCAAGCAAGGCACGACGCTTCATGTGAGCTTCATCGACAATGAGTAGGTCGATG 5169 Query 14521 TTGTCAGGAAACTCACGACGGATCAGCGTGTCGGCACTGGCAATCTGAATCAGTCGTGAC 14580 |||||||||||||| | |||||||| ||||| || ||||||||||| ||||| | Sbjct 5170 TTGTCAGGAAACTCCCTGCGGATCAGTGTGTCTGCTGAAGCAATCTGAATTAGTCGGCTC 5229 Query 14581 GGGTCATAGTTAG---GGTGATCACGCCATACAAAACTGATTTCTTCCCACGGCAAACCG 14637 | || || || ||| ||| ||||| ||| | ||||||| ||| ||||||||| Sbjct 5230 ---TGATCGTGAGGCTGGTAATCGCGCCAGACATAGCTGATTTGCTCCTCTGGCAAACCG 5286 Query 14638 TATTCGGTGAAACGTTCCGCTGTCTGGT 14665 || | | || || | || ||||||| Sbjct 5287 TACTGTATAAACCGCTGAGCAGTCTGGT 5314 Score = 86.0 bits (94), Expect = 2e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 12558 TGCGCATCATTGTCAGCAAAGATAATCAGGTGATTAACGCCAGGTGGCGCAATGAACTTC 12617 |||| ||| | || | || |||| ||| || ||||| |||| |||||| || || ||| Sbjct 3194 TGCGGATCCATATCCGTGAAAATAACCAGATGCTTAACTCCAGCTGGCGCGATAAATTTC 3253 Query 12618 TCCATAAAACCGGAGTTCATTGTTGACCACACATTGCAGCGGAAGATTTGACGGCATGAA 12677 ||||||| |||||| || |||||| ||| | | ||| || |||||| Sbjct 3254 GCCATAAAGTTGGAGTTGATAACTGACCAGGTATTAACGTGATAGAGCTGCTTACATGAA 3313 Query 12678 AGCGCAGTTTCGATACCCTCGGCTATCCCCAGAGTGGACGACACCGGATACAGGCGTATT 12737 ||||||||||| || ||||| || || || || || || | || || | || |||||| Sbjct 3314 AGCGCAGTTTCAATTCCCTCAGCGATTCCTAGCGTTGATGCAACAGGGAAAAGACGTATT 3373 Query 12738 GCCACCGATTTGGCATGCTGCA 12759 || || || | |||| || || Sbjct 3374 GCGACTGAAGTCGCATACTCCA 3395 >seq201909 Length=21394 Score = 338 bits (374), Expect = 2e-88 Identities = 437/601 (73%), Gaps = 2/601 (0%) Strand=Plus/Plus Query 23551 CTGAGACTCGGTGTTATCACTGCTTCAGAAGT-TCACAATGTGATAGCAAAGCCACGTTC 23609 ||| ||||||| || || || || || || ||| || || || |||||||||| Sbjct 20028 CTGCGACTCGGCGTCATTACGGCGTCGTGTGTATCA-AACGTCATTTCAAAGCCACGCAG 20086 Query 23610 CGGCAGCAAATGGCCTGATACAAAAATGTCATACTTCCACACCCTGCTGGCTGAAGTTTG 23669 ||||| ||||||| | || | || ||||| ||||||||| || | || || || || Sbjct 20087 CGGCACCAAATGGACGGACATGAAGATGTCCTACTTCCACGAGTTGTTAGCAGAGGTATG 20146 Query 23670 TACTGGCGTGGCACCGGAAGTTAACGCTAAGTCGCTCGCATGGGGAAAGCAATACGAAGA 23729 ||||||||||| ||||| || || || ||| | || || ||||| ||||| | ||||| Sbjct 20147 CACTGGCGTGGCTCCGGAGGTGAATGCCAAGGCACTTGCGTGGGGTAAGCAGCATGAAGA 20206 Query 23730 TGATGCCCGTGCCCTCTTCGAATTTATCGCGGATGTTACCGTCTCGGAAACGCCAATAAT 23789 || | || || || || || | | | | || | || | || ||||||| | Sbjct 20207 CTCAGCGAGAGCTCTTTTTGAGTTCACCACTGGCGTATCTGTAACTGAGGCGCCAATCCT 20266 Query 23790 TTTTCGTGACGAAAGCATGCGCACCGCCTGCTCTCCCGACGGTTTATGCAGCGACGGTAA 23849 | ||| || || |||| ||||| ||||| || ||||| | ||||| || || Sbjct 20267 CTATCGCGATGATTCTTTGCGTACCGCGTGCTCACCTGACGGGATTTGCAGTGATGGGCG 20326 Query 23850 CGGTCTTGAGCTTAAATGCCCTTTTACTTCCCGCGACTTCATGAAATTCCGGCTTGGCGG 23909 || || || | || |||||||| ||||| ||||| |||||||| ||||||||||| || Sbjct 20327 AGGCCTCGAATTGAAGTGCCCTTTCACTTCTCGCGATTTCATGAAGTTCCGGCTTGGTGG 20386 Query 23910 CTTTGACGCTATCAAGCCTGCTTACATGGCCCAGGTGCAATTCAGCATGTGGGTTACAGA 23969 || || || ||||| ||| ||||||||||||||||||| |||||||||||| || | Sbjct 20387 TTTCGATGCCATCAAAAGTGCGTACATGGCCCAGGTGCAATACAGCATGTGGGTAACGGG 20446 Query 23970 CAAGGACGCCTGGTACTTCGCCAACTACGACCCACGCATGAAGCGTGAAGGCCTGCATTA 24029 |||||| |||||||| ||||| ||||| ||||| ||||||||||||||||| | ||| | Sbjct 20447 CAAGGATGCCTGGTATTTCGCGAACTATGACCCTCGCATGAAGCGTGAAGGTATTCATCA 20506 Query 24030 TGTCGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTGATGAGATGGTGCCGGAGTT 24089 | | || ||||| || ||||| ||||| | ||||| || |||||||||||||| Sbjct 20507 CATTATCGTTGAGCGTGACGAAAAATACATTTCTGACTTTGAGGAAATGGTGCCGGAGTT 20566 Query 24090 CATCGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTGTATTTGGAGAACAATGGGG 24149 |||||| ||||||||| | || || ||||| || || | ||||| || |||||| | Sbjct 20567 CATCGAGAAAATGGACATCTCGCTCGCTGAAATAGGCTTCGAGTTTGGCGACCAATGGCG 20626 Query 24150 G 24150 | Sbjct 20627 G 20627 >seq449472 Length=298 Score = 158 bits (174), Expect = 5e-34 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 30392 AAATACACCCTCATTTACGCAGATCCCCCCTGGACATTCCGCGACAAAGCAACCGATGGT 30451 ||||||||||| ||||| |||||||| || ||||| | |||||| ||||| | ||| || Sbjct 62 AAATACACCCTGATTTATGCAGATCCACCGTGGACGTACCGCGATAAAGCCAACGACGGC 121 Query 30452 CAACGCGGTGCAAGTTTTAAATATCCGGTCATGAGTCTTCTGGATATCTGCCGCCTCCCG 30511 ||||||| ||| | |||||| | |||| | | |||||| ||||| | ||| Sbjct 122 GAACGCGGCGCAGGACATAAATACCAAACGATGACCGTGCAGGATATTTGCCGTTTGCCG 181 Query 30512 GTATGGGAACTGGCAGCCGATAATTGCCTGTTGTCTATGTGGTGGGTGCCTACACAACCA 30571 ||| |||| || | | || ||||||||| || |||||||||||||||| || ||||| Sbjct 182 GTAAGGGATTTGTCCGAAGAGAATTGCCTGCTGGCTATGTGGTGGGTGCCAACTCAACCG 241 Query 30572 CTTGAAGCATTGAAGGTTGTAGAAGCGTGGGGCTTTCGTCTGGTGACGATGAAAGGA 30628 | ||||| ||||||| | || || ||||| || || ||| |||| ||||| ||| Sbjct 242 ATGGAAGCGCTGAAGGTGATGGATGCCTGGGGGTTCCGGCTGATGACCATGAAGGGA 298 >seq369136 Length=224 Score = 138 bits (152), Expect = 4e-28 Identities = 143/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 23973 GGACGCCTGGTACTTCGCCAACTACGACCCACGCATGAAGCGTGAAGGCCTGCATTATGT 24032 ||| |||||||| ||||| ||||| ||||| ||||||||||||||||| | ||| | | Sbjct 224 GGATGCCTGGTATTTCGCGAACTATGACCCTCGCATGAAGCGTGAAGGTATTCATCACAT 165 Query 24033 CGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTGATGAGATGGTGCCGGAGTTCAT 24092 | || ||||| || ||||| |||||| | || || || ||||||||||| ||||| Sbjct 164 AATCGTTGAGCGTGACGAAAAATACATGTCCGACTTCGAAGAAATGGTGCCGGAATTCAT 105 Query 24093 CGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTGTATTTGGAGAACAATGGGGGGT 24152 ||| |||||||| | | ||||| ||||| || || | |||||| || |||| || ||| Sbjct 104 CGAAAAAATGGATTTATCTCTGGCTGAAATCGGCTTCGAATTTGGCGACCAAT-GGCGGT 46 Query 24153 TAATAA 24158 ||||| Sbjct 45 GAATAA 40 >seq147806 Length=6067 Score = 113 bits (124), Expect = 2e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 33616 TAAAAAGAGCGGGTATCCGATCCCGTAAAGCGTATCAGTCACGCCATACCTATGCGTGCT 33675 ||||| ||| ||||| | | | ||||| |||||||| || || || |||||||||| Sbjct 3961 TAAAAGTAGCAGGTATTACAGACAGGAAAGCATATCAGTCTCGACACACATATGCGTGCT 3902 Query 33676 GGGCTTTATCTGCCGGAGCAAACCCGACATTTATTGCATCACAGATGGGGCACTCCAGCG 33735 || | || |||| ||||| ||||| | ||||||||| | || ||||| ||| ||| | Sbjct 3901 GGTCATTGGCTGCAGGAGCTAACCCTAACTTTATTGCAACTCAAATGGGTCACACCAATG 3842 Query 33736 CCAGCATGGTCTACAATGTTTATGGTGCATGGATGCCTGA 33775 | |||||| |||| |||||||| || ||||||||||| Sbjct 3841 CTCAAATGGTCCACAACGTTTATGGGGCGTGGATGCCTGA 3802 >seq189010 Length=996 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 10216 TGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACCACT 10275 ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| Sbjct 777 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 836 Query 10276 GAGCTAAAGGGCC 10288 ||||||||||||| Sbjct 837 GAGCTAAAGGGCC 849 >seq286911 Length=6367 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 10210 ATATGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTC 10269 || ||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||| Sbjct 5712 ATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 5771 Query 10270 ACCACTGAGCTAAAGGGCC 10288 ||||||||||||| ||||| Sbjct 5772 ACCACTGAGCTAAGGGGCC 5790 >seq462907 Length=336 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 10210 ATATGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTC 10269 || ||||||||| |||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 19 ATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 78 Query 10270 ACC-ACTGAGCTAAAGGGCC--GGGCGCAGGATAATAA 10304 ||| ||||||||| ||||| |||||||||| |||| Sbjct 79 ACCAACTGAGCTATGGGGCCTGAGGCGCAGGATTATAA 116 >seq203346 Length=2488 Score = 86.0 bits (94), Expect = 2e-12 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 3225 ACCTTTTAGTGATGAACCTTGTCACACAGGATTCCGGCCCACAGAAAGGCACCGATCACC 3284 |||||||||||||||||| |||| ||||||| |||||| |||||| || |||| || | Sbjct 1002 ACCTTTTAGTGATGAACCCTGTCGCACAGGAAGACGGCCCCCAGAAA-GCTCCGA-CAGC 1059 Query 3285 AAACCGGCATCCTCAAGGGTCATCCTG-AAAGGTTCTG 3321 | |||| ||||||||| ||||||| |||||||||| Sbjct 1060 TAGCCGG-TTCCTCAAGGTGCATCCTGAAAAGGTTCTG 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194033262633194