Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq123396 448 2e-121 seq201909 338 2e-88 seq292125 309 1e-79 seq449472 167 9e-37 seq369136 138 5e-28 seq147806 109 2e-19 >seq123396 Length=12579 Score = 448 bits (496), Expect = 2e-121 Identities = 844/1225 (69%), Gaps = 27/1225 (2%) Strand=Plus/Minus Query 21096 ACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTAT 21155 ||||||| || | || || | | ||||||||||| ||| ||||||| | ||| | Sbjct 5314 ACCAGACTGCTCAGCGGTTTATACAGTACGGTTTGCCAGAGGAGCAAATCAGCTATGTCT 5255 Query 21156 GGCGTGATCACC---CTAACTATGACCCGTCACGACTGATTCAGATTGCCAGTGCCGACA 21212 |||| ||| ||| || || || | | ||||| ||||||||||| || |||| Sbjct 5254 GGCGCGATTACCAGCCTCACGATCA---GAGCCGACTAATTCAGATTGCTTCAGCAGACA 5198 Query 21213 CGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACA 21272 | |||||||| | |||||||||||||||||||| || || || |||||||||| |||| Sbjct 5197 CACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCACA 5138 Query 21273 TGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGACAGAGACATCAGGGTTCTTGGACTTT 21332 ||||||||||||| || |||||| ||||||| ||| | ||||| | ||| | || || | Sbjct 5137 TGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGACCGCGACATTCGTGTTGTCGGGCTGT 5078 Query 21333 CCGGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAA 21392 | || || || ||| | | |||||||| |||| ||||| |||| ||||| || || | Sbjct 5077 CTGGAACGCCTTTCTCGCCGTGGATGGGCCAGTATTACGAGCGCCTCATCAAACCCACCA 5018 Query 21393 CGATTCGTGAACTTATTCAGC-GTGGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCA 21451 |||| || || | | ||| |||||| || || ||||| |||| || || | Sbjct 5017 CGATGAAAGAGCTGA-TAAGCATTGGTGACCTTAGTCCCTACGAATTTTACGCGCCGACT 4959 Query 21452 ATGCCTGATCTGGCTGGCGTAAAAA---CCAGTAACACCGTATTTGGACGGGATTACAAC 21508 | ||||| || || ||||||| |||| | | ||||||||| || |||||| Sbjct 4958 ACACCTGACTTGAAAGGGGTAAAAACTTCCAGCCTGTCGGGATTTGGACGCGACTACAAC 4899 Query 21509 GAGGAGCAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTTCGCAAC 21568 || || ||| | || || ||||| | | | | |||| ||||||||||| ||||| Sbjct 4898 GAAGACCAGTTGGCCGAGATTATGGGTGATGCCGCTTTGGTGGGCGATATCGTCAGCAAC 4839 Query 21569 TGGCTTGAGAATGGCGAGGATTTGCCGACGATCTGCTTTTGCGTGAATGTTGCGCATGCG 21628 ||||| |||| |||||||| ||| || | ||||| || || || | ||||| Sbjct 4838 TGGCTGCAGAACGGCGAGGACCGGCCAACTGTTTGCTTCTGTGTCAACCAGTCTCATGCC 4779 Query 21629 AATTTTGTTACCCGTGAGTTTTTACAGGCCGGTATTGGC-GCAGAGGTGATGACGGCAGA 21687 || | || |||| ||| || | | | | |||| || ||| | |||| | | Sbjct 4778 GGGTTCATAACGACTGAG-TTTAACCGTGCTGGAGTGGCGGCGGAGATCATGATTGATGC 4720 Query 21688 TAC-CCTCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGCGCGACCAAAA 21746 || || ||| |||||||| | || |||| || || ||| |||||| || || | Sbjct 4719 CACTCCGCCA-GATGAACGTCGAATGATTATTCATCGCTTCGAACAGGGCGTAACGAAGA 4661 Query 21747 TAATTGTCAACGTTGGTGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATCT 21806 |||| || ||||||||||| ||| || || |||||||||||||| || ||| | |||| Sbjct 4660 TAATCGTTAACGTTGGTGTGCTGACCGCAGGCTTTGACAGCGATGTACGGTGCATCATCT 4601 Query 21807 ACGCCCGTCCGACAAAATCAGAAATCCGTTGGTTGCAGTGCATAGGTAGAGCGTTACGTA 21866 | |||||||| |||||||||||||| || ||| | ||| | ||| | | | || | Sbjct 4600 ATGCCCGTCCAACAAAATCAGAAATGCGCTGGATTCAGGTGTTGGGTCGCGGACTCCGCA 4541 Query 21867 CAGCCCCAGGTAAAAAACGTGCGTTGATTTTCGACCATTCTGGTACGGTTCATCGGCTGG 21926 | || ||||| ||| | | | ||||||| || || |||| | || || |||| Sbjct 4540 CGGCACCAGGGAAAGACCATTGTCTGATTTTTGATCACAGCGGTAGCATACACCGCCTGG 4481 Query 21927 GCTTCCCCGAGGATATCGAGTATGACGAACTGCCGGGTAAAAATGACGGAATGAAAGCGT 21986 ||| ||| || || |||||||||||||| || || |||| |||||| |||||| | Sbjct 4480 GCTACCCGGATGACATCGAGTATGACGACTTGAGCGGCAAAAGTGACGGCATGAAATCAG 4421 Query 21987 CTGCTGGCGGTGGCGA---GGTTAAGGCTGAGAAACTTCCCAGAGAATGCCCCAAATGCC 22043 |||| || || |||| | ||| ||||| |||| ||| || | | |||| Sbjct 4420 CTGCAGGTAGTAGCGAACCTGAGAAGATCGAGAAGAAACCCAAAGAGTGTTCGCAGTGCC 4361 Query 22044 ACTTCATGAAGCCTGCTGGTGTACACATGTGTCCCAAATGTGGGTTTCGTCCTCTTGGTG 22103 | ||||||||||||||||| ||| | | || || || ||||| || ||| | |||| Sbjct 4360 ATTTCATGAAGCCTGCTGGGGTATATGTATGCCCGAAGTGTGGATTCAAGCCTGTAGGTG 4301 Query 22104 GCGATGATGTGGCAACAGACCGCGATCGAAAACTCTCTCGCGTAAACAAAGGGAAACGC- 22162 | || | || | ||| ||| || ||||| ||| || || ||||| | Sbjct 4300 GAGAGAACGTAGAAACGGACACTACCCGCAAACTGCACCGCCTA---AAGGGGAATGTCA 4244 Query 22163 GAA--TACAGTCGCGAGGAAAAGCAGCGTTGGTGGAGTGAGATCAAGGGGTATCAGAATT 22220 ||| || || ||| |||| |||||| ||||||||| ||||||||||||| ||| | Sbjct 4243 GAACCTATAGCCGCAAGGATAAGCAGTCATGGTGGAGTCAGATCAAGGGGTACCAGCGCT 4184 Query 22221 ACCGC-AACGCGACG--GGTAAACCCCTGAGTGACGGATGGTGCGCTCATACCTACAAGG 22277 ||||| || | ||||| | ||| ||||||||||||||||| | || || Sbjct 4183 ACCGCGCACTTAGTGGTGGTAAGAATTTATCTGATGGATGGTGCGCTCATACTTTCAGGG 4124 Query 22278 AGAAGTTCGGTGTGTGGCCTAAAGG 22302 | |||||||| | ||||| || || Sbjct 4123 ATAAGTTCGGAGAATGGCCAAATGG 4099 Score = 84.2 bits (92), Expect = 9e-12 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23002 TGCAGCATGCCAAATCGGTGGCAATACGCCTGTATCCGGTGTCGTCCACTCTGGGGATAG 23061 || || |||| | || || |||||||| || | || || | || || || || || | Sbjct 3395 TGGAGTATGCGACTTCAGTCGCAATACGTCTTTTCCCTGTTGCATCAACGCTAGGAATCG 3336 Query 23062 CCGAGGGTATCGAAACTGCGCTTTCATGCCGTCAAATCTTCCGCTGCAATGTGTGGTCAA 23121 | ||||| || ||||||||||||||||| || ||| | | ||| |||||| Sbjct 3335 CTGAGGGAATTGAAACTGCGCTTTCATGTAAGCAGCTCTATCACGTTAATACCTGGTCAG 3276 Query 23122 CAATGAACTCCGGTTTTATGGAGAAGTTTATTGCGCCACCAGGCGTTAATCACCTGATTA 23181 || |||||| ||||||| ||| ||||| |||||| | || ||||| || ||| ||| Sbjct 3275 TTATCAACTCCAACTTTATGGCGAAATTTATCGCGCCAGCTGGAGTTAAGCATCTGGTTA 3216 Query 23182 TCTT 23185 | || Sbjct 3215 TTTT 3212 >seq201909 Length=21394 Score = 338 bits (374), Expect = 2e-88 Identities = 437/601 (73%), Gaps = 2/601 (0%) Strand=Plus/Minus Query 11619 CCCCCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGAT 11678 || |||||| || ||||| | || || ||||| || || | ||||||||| ||||| Sbjct 20627 CCGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCTCGAT 20568 Query 11679 GAACTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGAC 11738 ||||||||||||||| || ||||| | ||||| ||||| || ||||| || | | Sbjct 20567 GAACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGATAAT 20508 Query 11739 ATAATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTT 11798 | ||| | ||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 20507 GTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATCCTT 20448 Query 11799 GTCTGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAA 11858 | | || |||||||||||| ||||||||||||||||||| ||| ||||| || || || Sbjct 20447 GCCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGCACTTTTGATGGCATCGAA 20388 Query 11859 GCCGCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACC 11918 || |||||||||||||||||||| ||||| ||||| || ||||| || | || || || Sbjct 20387 ACCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTCGAGGCC 20328 Query 11919 GTTACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAA 11978 || |||||||| | || || || ||||| ||||| |||| || || ||| | Sbjct 20327 TCGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATCGCGATA 20268 Query 11979 AATTATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATC 12038 | || || | || | || | || | | | | || ||||| || || | || Sbjct 20267 GAGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCTCGCTGA 20208 Query 12039 ATCTTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGT 12098 ||||||| ||||| ||||| || || | ||| || || || ||||| ||||||||||| Sbjct 20207 GTCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCACGCCAGT 20148 Query 12099 ACAAACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCC 12158 || || || || | || ||||||||| ||||| || | || | ||||||| |||| Sbjct 20147 GCATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTTGGTGCC 20088 Query 12159 GGAACGTGGCTTTGCTATCACATTGTGA-ACTTCTGAAGCAGTGATAACACCGAGTCTCA 12217 | |||||||||| || || || ||| || || || || || || ||||||| || Sbjct 20087 GCTGCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGAGTCGCA 20029 Query 12218 G 12218 | Sbjct 20028 G 20028 Score = 196 bits (216), Expect = 2e-45 Identities = 282/388 (73%), Gaps = 15/388 (4%) Strand=Plus/Minus Query 31773 AACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTTGATGCTAAATACTC 31832 |||||| | |||||||||| |||||||| ||||||||||| || || || || ||| | Sbjct 4125 AACCATCAATGATATGCAGACACGCCAGCGCGATGTTGCTGCTCTGGACGCCAAGTACAC 4066 Query 31833 GAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATG-TTGCCGCTG 31891 | ||| ||||||||||| |||||||| | || ||| || | | ||| || Sbjct 4065 AAAGGAGTTAGCCGATGCACAAGCTGAAACTACTGCTTTGCA-GCACAAGCTTGATAATG 4007 Query 31892 GTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGTGCGTGAAG--CCACCGG 31949 || || || |||| |||| | | ||||| | || ||| || || ||| Sbjct 4006 GTGGT---CGGGTGCGCGTCAAAGGAAACTGCCAA--TCCCAGCCGTCAACTACCTCCGC 3952 Query 31950 CACCTCCGGCGTGGGCAATGATGCCAGCGTCGAACTCTCTCCAGTTGCTGGACGAAACGT 32009 | || || || |||||||||||| | ||||||||||||| ||||||||||||||||||| Sbjct 3951 CCCCCCCAGCTTGGGCAATGATGGAACCGTCGAACTCTCTTCAGTTGCTGGACGAAACGT 3892 Query 32010 TCTCGGTATCAGAGACGGAATCATCAGCGACCAGGCAGCACTGAGAACGCTTCAGGAATA 32069 |||| ||||| || ||||||| |||||||| |||||||||| ||||||||||||| Sbjct 3891 TCTCAGTATCCGATCCGGAATCCAGCGCGACCAGTCAGCACTGAGGGCGCTTCAGGAATA 3832 Query 32070 TATCCGCACTCAGTG-CTTGAATTAACAGAGCCAGCATGATCG--CTGGCTTTTTCATAT 32126 ||| |||||| || || ||| |||| |||| | | ||| | |||||||| || Sbjct 3831 CATCAACACTCAATGCCTCAAATAAACATAGCCTGACT--TCGGTCGGGCTTTTTTAT-G 3775 Query 32127 CTGAATTTCACCGCGCACCGCAGCGCAT 32154 | | | | ||||||| |||||||||| Sbjct 3774 CAGTAAGCCCCCGCGCATCGCAGCGCAT 3747 >seq292125 Length=1950 Score = 309 bits (342), Expect = 1e-79 Identities = 329/433 (76%), Gaps = 6/433 (1%) Strand=Plus/Minus Query 32318 AAGATGGCATGATCTGCCTCACTGATATGTGGAAAGCCAGTGGTAAAAGTGAATCTGAAT 32377 |||| || ||||| ||||| ||||||||||||||||||||||| ||||| ||| |||| Sbjct 1508 AAGAGGGTATGATTTGCCTGACTGATATGTGGAAAGCCAGTGGGAAAAGCGAAAGCGAAT 1449 Query 32378 CTCCATACCACTACCTGAGAAACAAGCAGACCAAAGAGTTCTTAGCCGAGCTGGAGAAAA 32437 | || ||||| || || | ||||| ||||| ||||| ||| | | ||||| ||||||| Sbjct 1448 CCCCTTACCATTATCTCCGTAACAAACAGACAAAAGAATTCCTGACAGAGCTTGAGAAAA 1389 Query 32438 ACCACGAATCTGTGGTTTTTACTGAGCGCGGTGTACACGGTGGAACATATGGCGGGAAGT 32497 ||||||||||||||||||| |||||||| || || | || || || ||||| || |||| Sbjct 1388 ACCACGAATCTGTGGTTTTCACTGAGCGGGGAGTCAAAGGGGGTACTTATGGTGGTAAGT 1329 Query 32498 TTGTTGCTTATGATTATGCAGCATGGCTAAACCCCGGATTTAAATATGCAGCCTATAAAG 32557 |||| || ||||| ||||| |||||||||||||| ||||||||||||||||| || |||| Sbjct 1328 TTGTGGCATATGACTATGCGGCATGGCTAAACCCTGGATTTAAATATGCAGCGTACAAAG 1269 Query 32558 TCCTGGATGACTACTTCACCGGAGAACTTCAGCATCGCAACAGCT---TAAGTGCGCAGC 32614 | || ||||| || ||||| || ||||| || |||| |||| | || || ||| Sbjct 1268 TTCTTGATGATTATTTCACAGGTCAACTT---CAACGCAGAAGCTCTCTCAGCGCTCAGT 1212 Query 32615 TCAATATGAAGTGCCATGAGTTTGATCAGAAAAAAGATATGGCGAGCTTCTGTGGACAAG 32674 | ||||| || || |||||||| ||||| |||||||||||||| || || || || | Sbjct 1211 TGAATATTAAATGTATGGAGTTTGACCAGAAGAAAGATATGGCGAGTTTTTGCGGGCAGG 1152 Query 32675 GGCTCGCGGCATGGCGCTATACGAAGCCAGTGTTGGTCGCTGAGATTAACTCCTTGGCTA 32734 || | || | ||| || || | || |||| |||||||| || || || | | Sbjct 1151 GGTTGGCTGGCTGGAAACATGAAAAAGCTGTTCTGGTTGCTGAGATAAATTCTCTGACAA 1092 Query 32735 ACCAGCTGCAGAT 32747 ||| | ||||| Sbjct 1091 GTCAGTTACAGAT 1079 >seq449472 Length=298 Score = 167 bits (184), Expect = 9e-37 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 3385 TCCTTTCATCGTCACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGG 3444 ||| ||||| |||| ||| || || ||||| || || | ||||||| ||||| | || Sbjct 298 TCCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGG 239 Query 3445 TTGTGTAGGCACCCACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGG 3504 ||| || ||||||||||||||||||| |||||||||||| | | || |||| |||||| Sbjct 238 TTGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGG 179 Query 3505 GAGGCGGCAGATATCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACC 3564 | ||||| |||||| | | |||| | |||||| | ||| ||||||| || Sbjct 178 CAAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCC 119 Query 3565 ATCGGTTGCTTTGTCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3621 ||| | ||||| |||||| | ||||| || |||||||| ||||| ||||||||||| Sbjct 118 GTCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT 62 >seq369136 Length=224 Score = 138 bits (152), Expect = 5e-28 Identities = 143/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 11611 TTATTAACCCCCCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATT 11670 ||||| ||| || |||| || |||||| | || || ||||| ||||| | | |||||| Sbjct 40 TTATTCACCGCC-ATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATT 98 Query 11671 TTGTCGATGAACTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCG 11730 || |||||||| ||||||||||| || || || | |||||| ||||| || ||||| Sbjct 99 TTTTCGATGAATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCA 158 Query 11731 ACCACGACATAATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAG 11790 || | | | ||| | ||||||||||||||||| ||||| ||||| ||||| |||||| Sbjct 159 ACGATTATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAG 218 Query 11791 GCGTCC 11796 || ||| Sbjct 219 GCATCC 224 >seq147806 Length=6067 Score = 109 bits (120), Expect = 2e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 208 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 267 ||||||||||| || |||||||| |||| |||||| || ||| ||| ||||| || Sbjct 3802 TCAGGCATCCACGCCCCATAAACGTTGTGGACCATTTGAGCATTGGTGTGACCCATTTGA 3861 Query 268 GACGCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGT 327 | |||||||| | ||||| ||||| |||| || | |||||||||||| || || || Sbjct 3862 GTTGCAATAAAGTTAGGGTTAGCTCCTGCAGCCAATGACCAGCACGCATATGTGTGTCGA 3921 Query 328 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTA 367 |||||||| ||||| | | | ||||| ||| ||||| Sbjct 3922 GACTGATATGCTTTCCTGTCTGTAATACCTGCTACTTTTA 3961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199775474291372