Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq260686 201 1e-46 seq1462 176 5e-39 seq209331 170 2e-37 seq213894 163 3e-35 seq222524 159 4e-34 seq79071 158 1e-33 >seq260686 Length=13603 Score = 201 bits (222), Expect = 1e-46 Identities = 346/500 (69%), Gaps = 2/500 (0%) Strand=Plus/Minus Query 128589 GGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 128648 || ||||||| || || | ||| ||| | || || | | |||||| || || | | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 128649 TGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 128708 || || || || || | |||||| | ||||| | || || || ||||||||| || Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 128709 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 128768 || || ||| |||| ||||||| ||||| ||||| ||| |||| ||||| || || || Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 128769 CGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAATA 128828 || || ||||| || |||||||| || || || || ||||||||||| |||| ||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 128829 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGAATCATACCT 128888 || || || |||||||| | || || ||||| || ||| Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 128889 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAATTGACGCAGCAGCT-TC 128947 || ||||| || ||||| ||||||| | | ||| || ||| | ||| | || | | Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGC 5280 Query 128948 GTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACTGACGTGT 129007 |||||| |||| ||| || || |||| ||||| | ||||| || || ||||| || || Sbjct 5279 GTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGT 5220 Query 129008 CGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 129067 ||| || || || || ||||||||||| || |||| |||||||| || || | || Sbjct 5219 CGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGC 5160 Query 129068 ATCATAGAAACGAATAACGT 129087 ||| |||||||| | |||| Sbjct 5159 ATCGTAGAAACGCTTGACGT 5140 >seq1462 Length=4781 Score = 176 bits (194), Expect = 5e-39 Identities = 317/461 (69%), Gaps = 2/461 (0%) Strand=Plus/Minus Query 128621 CAAACGTTCAATCATCAGGTTATTAATCTGAACACCATAATCTAAATGACGAATACGGTT 128680 || ||||| | ||| || || || || || || || ||||||| ||||| | |||||| Sbjct 1458 CAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTT 1399 Query 128681 TTCATCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGAT 128740 | || ||||| ||| || || || || | | | |||||| |||||||||||| || Sbjct 1398 ACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACAT 1339 Query 128741 TGGATAGTACAGTGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGC 128800 || || |||||||||| || || || || || |||||||| ||||| ||||| || || Sbjct 1338 AGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGC 1279 Query 128801 TGTTTGGAAGTGCTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAAT 128860 || |||||||| || |||| || ||| || ||||| ||||||| | || Sbjct 1278 CGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT 1219 Query 128861 TTTTGAACCTTCTGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGAT 128920 | ||| |||||||| || ||||| ||||| || ||||| || | | Sbjct 1218 TGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAAC 1159 Query 128921 GTATTTTGTAATTGACGCAGCAGCTTCGTTAATTGAAT-TAAGACTATCACCGCCTTCAA 128979 |||||| || | || || |||| || || | |||| ||||| || | || | Sbjct 1158 GTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAG-CTATCGCCACACTCGA 1100 Query 128980 TAACCACGCATGAACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTG 129039 ||| ||||||||| || || || || ||||| || || || |||| ||| ||||| || | Sbjct 1099 TAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAG 1040 Query 129040 GCAATGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGA 129080 | || ||||| || || || || |||||||| || ||| Sbjct 1039 GTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq209331 Length=9407 Score = 170 bits (188), Expect = 2e-37 Identities = 150/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 48802 ATTATAGTGCCTCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGG 48861 |||| |||| | ||||| || || | || || || |||||||||| ||||| | Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 48862 AGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGAT 48921 |||| ||||| |||||||| |||||||| ||||||||||||||||||||||| || |||| Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 48922 GCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 48981 | || | |||||||||||| ||||||| || ||||||||||| ||||||||||||| Sbjct 422 GTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 481 Query 48982 CTTCAAT 48988 |||| || Sbjct 482 CTTCGAT 488 >seq213894 Length=28734 Score = 163 bits (180), Expect = 3e-35 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 ||||| ||||| | ||| || || |||||||||| ||||| ||||||||||||||| Sbjct 8976 GTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAGCGTACC 8917 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 || ||||| || || |||||||| | |||||||||||||||||| | || | ||| ||| Sbjct 8916 GCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGCTTCC 8857 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988 ||||| ||||||| || |||||| ||||| ||||||||||| |||||||| Sbjct 8856 AGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 8804 >seq222524 Length=8439 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| | || ||||| ||||||||||| | ||||| ||||| || || Sbjct 4035 TCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACGC 4094 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || || |||||||| ||||||||||||||||||||||| ||||| |||| ||||| Sbjct 4095 ACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGCC 4154 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985 || ||| |||||||| | ||| ||||| |||||||| ||||||||||| || Sbjct 4155 TCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq79071 Length=852 Score = 158 bits (174), Expect = 1e-33 Identities = 140/175 (80%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| | || |||||||||||||| || | |||||| ||||| || || Sbjct 191 TCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGC 250 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || ||||| |||||||| || |||||||||||||| ||||| ||||| | ||| || Sbjct 251 ACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCA 310 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAA 48987 || ||| ||||| |||||||| ||||| |||||||| ||||| || ||||||| Sbjct 311 TCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528753321066680