Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq65234 226 3e-54 seq1462 129 6e-25 seq366053 107 2e-18 seq255299 107 2e-18 seq209331 104 2e-17 seq70204 100 3e-16 seq102074 96.9 4e-15 seq79071 96.9 4e-15 seq213894 86.0 6e-12 >seq65234 Length=1614 Score = 226 bits (250), Expect = 3e-54 Identities = 299/409 (73%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 137507 ATTAATTTGAACACCATAATCTAAATGACGAATACGGTTTTCTTCAATACCTTTATTATT 137566 ||||||||| ||| ||||||| | |||||| | | ||||||||||| ||| ||||||| Sbjct 658 ATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATT 717 Query 137567 TTTAAGAACTAACAATTTTTCTAATTCAAGGTGCCACATTGGGTAATATAAAGTAGCAGA 137626 ||| | |||||| || ||||| | ||| || ||||| ||||||||| | | ||| || | Sbjct 718 TTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGC 777 Query 137627 ACCACCTCGAATCCCACCTTGGGAACATGATTTTACAGATGCCAAATGG--GT-TTTCCA 137683 || |||| || |||||||| ||||| |||||||| ||| ||| || ||| | Sbjct 778 CCCTCCTCTAACTCCACCTTGAGAACAAGATTTTAC---TGCGCTTTGGAAGTGTTTATA 834 Query 137684 AAATGGAATGACA-CCGGTATGGACAACTTCGCCAAATCCTATTTTAGACCCTTCAGCCC 137742 ||| ||||| ||| |||||||| | |||| ||| || || | ||| ||| | Sbjct 835 AAAAGGAAT-ACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTC 893 Query 137743 TATACATACCGGCATTAATACCAATACCAGCTCTTTTAGAAATGTATTTTACAATAGCTG 137802 | ||| || ||||| || || || |||| || ||||| ||||||||||| || Sbjct 894 GAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCAC 953 Query 137803 CATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTATCAATAACTACGCAAGAACTAA 137862 | |||| |||||||||| | |||| ||| | | ||||| | || |||||||||| Sbjct 954 TAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAA 1013 Query 137863 ATTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTGTTGGTAAAGA 137911 ||||||| ||||| |||||||| || |||| ||| ||||| |||| ||| Sbjct 1014 ATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 1062 >seq1462 Length=4781 Score = 129 bits (142), Expect = 6e-25 Identities = 293/434 (68%), Gaps = 9/434 (2%) Strand=Plus/Minus Query 137487 AGTCGTTCAATCATAAGGTCATTAATTTGAACACCATAATCTAAATGACGAATACGGTTT 137546 || |||| | ||| || | || ||||| || || ||||||| ||||| | |||||| Sbjct 1457 AGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTA 1398 Query 137547 TCTTCAATACCTTTATTATTTTTAAGAACTAACAATTTTTCTAATTCAAGGTGCCACATT 137606 |||||| ||| |||||||| || ||||| || |||| | ||| | ||||||||| Sbjct 1397 CCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATA 1338 Query 137607 GGGTAATATAAAGTAGCAGAACCACCTCGAATCCCACCTTGGGAACATGATTTTACAGAT 137666 |||||| | | || || | ||| || || | || ||||| || || ||||| || | Sbjct 1337 GGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCC 1278 Query 137667 GCCAAATGG--GT-TTTCCAAAATGGAATGACACCGGTATGGACAACTTCGCCAAATCCT 137723 | | ||| || ||| | || || || ||||||||||| | |||| ||| | Sbjct 1277 GTC---TGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGG 1221 Query 137724 ATTTTAGACCCTTCAGC-CCTATACATACCGGCATTAATACCAATACCAGCTCTTTTAGA 137782 ||| ||| || | |||| || ||||| ||||| || || || | || || Sbjct 1220 ATTGGGCTGCCTAGCGCACGAATAC-GGCCAGCATTGATACCGATCCCTGCGCGTTGTGA 1162 Query 137783 AATGTATTTTACAATAGCTGCATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTATC 137842 || |||||| || ||||| | || | || ||||| ||||| ||| || | || Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 1102 Query 137843 AATAACTACGCAAGAACTAAATTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTGT 137902 |||| ||||| || || ||||| || || || || | ||| |||| || ||||| || Sbjct 1101 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 1042 Query 137903 TGGTAAAGACAATT 137916 ||||| || |||| Sbjct 1041 AGGTAAGGA-AATT 1029 >seq366053 Length=223 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 64860 TGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCC 64919 |||||| | ||||||||||||||||||||||||| ||||||||||| | |||||||||| Sbjct 223 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 164 Query 64920 AACTGAGCTAAGTGTGCAT 64938 |||||||||||| | |||| Sbjct 163 AACTGAGCTAAGGGCGCAT 145 >seq255299 Length=12406 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 64860 TGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCC 64919 |||||| | ||||||||||||||||||||||||| ||||||||||| | |||||||||| Sbjct 3294 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 3353 Query 64920 AACTGAGCTAAGTGTGCAT 64938 |||||||||||| | |||| Sbjct 3354 AACTGAGCTAAGGGCGCAT 3372 >seq209331 Length=9407 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 55540 AGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGAC 55599 ||| || |||| | |||| ||||| | | ||||||| |||||| || ||||| | ||| Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 55600 GGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATC 55659 || || || ||||||||||| || | || |||||||| || |||||||| | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 55660 TAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCT 55716 | || |||||| || | ||| || || || || || || || |||||||| || Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGATGCT 491 >seq70204 Length=1350 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 64857 AAATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTA 64916 ||||||||| | ||| ||||||||||||| ||||||| ||||||||||| | ||||||| Sbjct 927 AAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTA 986 Query 64917 TCCAACTGAGCTAAG 64931 ||||||||||||||| Sbjct 987 TCCAACTGAGCTAAG 1001 >seq102074 Length=1593 Score = 96.9 bits (106), Expect = 4e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 64869 CTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCCAACTGAGCT 64928 ||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||| Sbjct 1131 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCT 1072 Query 64929 AAG 64931 ||| Sbjct 1071 AAG 1069 >seq79071 Length=852 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 55538 TCAGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTG 55597 |||||||| || | | |||| || || | ||| || | ||||| || ||||| | Sbjct 191 TCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGC 250 Query 55598 ACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCA 55657 |||||||| || ||||| || || || | || ||||| ||||||||||||| ||| Sbjct 251 ACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCA 310 Query 55658 TCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTC 55710 ||| || | |||| | ||||| ||||| |||||||| ||||||||||| Sbjct 311 TCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTC 363 >seq213894 Length=28734 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 55540 AGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGAC 55599 ||| || || | | | || ||||| | | ||||||| |||||| || || || | || Sbjct 8977 AGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAGCGTAC 8918 Query 55600 GGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATC 55659 ||||| || || |||||||| ||||| || ||||||||||| || | ||| | || || Sbjct 8917 CGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGCTTC 8858 Query 55660 TAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGATTCT 55716 | || |||||| || | || ||||| || || || || || ||||| || || Sbjct 8857 CAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAATGCT 8801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515002866330840