Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq79071 199 4e-46 seq222524 174 2e-38 seq65234 156 4e-33 seq209331 136 4e-27 seq1462 136 4e-27 seq213894 129 6e-25 seq260686 89.7 5e-13 >seq79071 Length=852 Score = 199 bits (220), Expect = 4e-46 Identities = 155/185 (84%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 101917 TTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAG 101976 |||||||||| || || |||||||| |||||| ||||||| ||||| ||||||||||||| Sbjct 365 TTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAG 306 Query 101977 TTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT 102036 |||| ||||| ||||| |||||||||||||| |||||||| || || ||||| || || | Sbjct 305 TTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTT 246 Query 102037 TTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTT 102096 ||||||| ||||| || || |||||||||||||| || | |||||||| || || ||| Sbjct 245 TTAACTCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGTC 186 Query 102097 TGTAA 102101 | ||| Sbjct 185 TTTAA 181 >seq222524 Length=8439 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 || || ||||| || |||||||| ||||| || | |||||||| |||||||| || || Sbjct 4207 GAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTG 4148 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 ||||| ||||| |||||||||||||||||||| || || ||||||||||| || || ||| Sbjct 4147 AAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTT 4088 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAG 102094 |||||| |||| || ||||||||||| ||||| || | |||||||| || || || Sbjct 4087 AACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAG 4032 >seq65234 Length=1614 Score = 156 bits (172), Expect = 4e-33 Identities = 308/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 || |||||| | ||| | || ||| | || || | || || || |||||| | || Sbjct 1095 CGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGA 1036 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAG---GCAGGTGATTCA 22880 | || || ||||| || |||||||| || || | ||||| |||| | ||| Sbjct 1035 GTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATT-- 978 Query 22881 TTAAAGTCTATCAATAAGGCTTCCGCTT---CAATTGTTGAATATATCTCTAAACGCGCT 22937 |||| ||||| ||| ||| | || ||||||| ||||| | ||| |||| || Sbjct 977 -TAAACTCTATTAAT---GCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCA 922 Query 22938 GGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAA 22997 ||||| || ||||||| |||| ||||| || ||| | || | | || ||| Sbjct 921 GGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAA 862 Query 22998 GTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGT 23057 | | ||||| || ||||||||||| ||||| || || | || || ||||| ||| Sbjct 861 GCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGT 802 Query 23058 TCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAA 23117 || || || ||| || | || || || || |||| || ||| || || |||||| | ||| Sbjct 801 TCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAA 742 Query 23118 GTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCAT 23177 |||||||| | | ||||| |||||||| | ||| | |||||||| | | |||||| Sbjct 741 ATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCAT 682 Query 23178 ATGGATTATGGTGTTCAACTGAATGATCTAATG 23210 | ||||||| ||| ||| | ||| | ||||| Sbjct 681 CTTGATTATGCTGTACAAATTAATAAATTAATG 649 >seq209331 Length=9407 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 || ||||| ||||| ||||| |||||||||||| || ||||||| ||| || || Sbjct 488 ATCGAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCG 429 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | ||||| || |||||||||||||||||||| || || |||||||| || || ||| Sbjct 428 ATGGAACATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGC 369 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088 |||||||| |||||| |||||||||| || || || | || |||||||| Sbjct 368 TTTAACTCACTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCAC 316 >seq1462 Length=4781 Score = 136 bits (150), Expect = 4e-27 Identities = 290/433 (67%), Gaps = 0/433 (0%) Strand=Plus/Plus Query 22763 TCGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGG 22822 ||| |||||||| || || || || | ||||| || || || || || |||||||| Sbjct 999 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 1058 Query 22823 TTGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGATTCATT 22882 || || |||||||| || || || |||||||| |||| ||| || ||| || Sbjct 1059 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 1118 Query 22883 AAAGTCTATCAATAAGGCTTCCGCTTCAATTGTTGAATATATCTCTAAACGCGCTGGAAT 22942 | | |||||||| |||| | | || ||| |||| | || ||||||| || || Sbjct 1119 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 1178 Query 22943 TGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACG 23002 ||||| || | ||| |||||||| ||| || | ||||||| Sbjct 1179 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 1238 Query 23003 CCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGTTCACA 23062 |||||| ||| ||| || || | ||||| || ||||| || || ||||| || || || Sbjct 1239 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 1298 Query 23063 GGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGA 23122 ||||| | || || || || || || | ||| ||||| ||||| |||||| |||| Sbjct 1299 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 1358 Query 23123 AAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCATATGGA 23182 || | | || ||||||||||| ||||| |||| ||||| | ||||| | || Sbjct 1359 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 1418 Query 23183 TTATGGTGTTCAA 23195 ||| || || ||| Sbjct 1419 TTACGGCGTACAA 1431 >seq213894 Length=28734 Score = 129 bits (142), Expect = 6e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 |||||||| ||||| ||||| ||||| ||||| || ||||||| ||| || || Sbjct 8804 ATTGAAGGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCG 8863 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | | |||||||||||||||||| | ||||| || || || || ||||| || ||| Sbjct 8864 ATGGAAGACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGC 8923 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGT 102095 || ||||| |||||| |||||||||| || || ||| | ||||||||||| |||| Sbjct 8924 TTCAACTCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAGC 8983 Query 102096 TTGTAA 102101 ||||| Sbjct 8984 ATGTAA 8989 >seq260686 Length=13603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22992 GGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAA 23051 ||||||| | ||| || || ||||| || | || || || ||||| || || || Sbjct 5376 GGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAG 5435 Query 23052 TCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCAT 23111 || || || |||||||| | || || || || || || | || || || |||||| Sbjct 5436 TCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCAT 5495 Query 23112 TTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATT 23171 ||||||| |||| || || || |||| || ||| || || |||| |||||| | Sbjct 5496 CTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTG 5555 Query 23172 CGTCATATGGATTATGGTGTTCAACTGAA 23200 ||||||||||| || || || || ||||| Sbjct 5556 CGTCATATGGACTACGGCGTGCAGCTGAA 5584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531332326337440