Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq32733 149 3e-31 seq228004 120 1e-22 seq430283 86.0 3e-12 >seq32733 Length=979 Score = 149 bits (164), Expect = 3e-31 Identities = 213/296 (72%), Gaps = 13/296 (4%) Strand=Plus/Minus Query 64400 GCCGAGCTCGAAGGCGACATCGGGGAC-AG-TCACGTCGGCCTGCACGCGCGCCTCATGT 64457 ||||| |||||||||| || || ||| || | || |||||||| || ||||| ||| Sbjct 291 GCCGAAATCGAAGGCGAAATGGGTGACCAGCTGCCG--GGCCTGCAGGCCCGCCTGATGA 234 Query 64458 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 64517 |||||| |||||||||| ||||||| |||| || ||||||| ||| | ||| Sbjct 233 GCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCTGGTGGTCTTCA 174 Query 64518 TCAACCAGTTGCGCGAGAAGATCGGCAACGTG------GGCTACGGCCCGAACGAGACCA 64571 |||||||| ||||| |||||||||| || ||| | ||||| | | ||||| Sbjct 173 TCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCA 114 Query 64572 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 64631 || |||||||| || ||| |||||||||||| || ||| |||| ||||||| |||| Sbjct 113 CC---GGCGGCAACGCACTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTATCG 57 Query 64632 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTC 64687 | | ||| | ||||| ||| ||||||||| ||| | | ||||||||| Sbjct 56 GCGCGATCAAGAAGGGCGACGAGATCATCGGCAACCAGACCAAGATCAAGGTCGTC 1 >seq228004 Length=3045 Score = 120 bits (132), Expect = 1e-22 Identities = 472/729 (65%), Gaps = 20/729 (3%) Strand=Plus/Plus Query 64117 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 64176 |||||| | || || |||||||| || || |||||||| || | || ||| ||| || Sbjct 313 GGGCCGTATCGTTGAGATCTACGGACCTGAGTCTTCAGGTAAAACCACGCTGACTCTGCA 372 Query 64177 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 64236 | | || ||| ||| ||| | | |||| ||||| || ||||| | Sbjct 373 GGTTATCGCATCTGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCCGAGCATGC 432 Query 64237 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT-TC 64295 || || || | ||||||||| ||||| || ||| | || ||||| | || | || Sbjct 433 GCTTGATCCGGTTTACGCCAAGAAACTCGGCGTAGACATTGATAACCTGCTC-TGCTCTC 491 Query 64296 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 64355 |||| |||||||| |||||||| ||||| ||| ||| || | ||||| | Sbjct 492 AGCCAGACACTGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGGCGCGCTCTGGTGCCG 551 Query 64356 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 64415 | | | || |||| ||||| || ||||| ||| ||| || || ||||||| | Sbjct 552 TTGACGTGATCATCGTCGACTCCGTCGCGGCGCTGACGCCTAAAGCGGAAATCGAAGGTG 611 Query 64416 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 64475 | ||||| ||| ||| | ||||| || || | ||| ||||| ||||| || | Sbjct 612 AAATCGGTGACTCACACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAAC 671 Query 64476 TCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 64533 | |||| | | || |||| |||| || ||| | | | |||||||| | || Sbjct 672 TGGCCGGTAAC--CTGAAGCAGTCCAATACCCTGCTGATTTTCATCAACCAGATCCGTAT 729 Query 64534 GAAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 64591 ||| || || | || | || |||| || |||||||| || || || || || Sbjct 730 GAAAATTGGTGTGATGTTTGGTAA--CCCG---GAAACCACCACTGGTGGTAACGCGCTG 784 Query 64592 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 64651 | |||||||||||| ||||| | ||| |||| || |||| | || || |||||| Sbjct 785 AAGTTCTACGCCTCTGTCCGTCTTGATATCCGCCGTATCGGTGCAATCAAAGAGGGCGAT 844 Query 64652 GAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 64711 | | ||||||| ||||| || || || || || ||||| | ||| |||| | Sbjct 845 AACGTGGTCGGCAGTGAGACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCATTC 904 Query 64712 CGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC-TCGCGTGAGGTCGAACTCCT 64770 | || |||||| || ||||||| || || ||| | | ||| || || | Sbjct 905 AAACAGGCTGAGTTCCAGATCATGTACGGCGAAGGTATCAATACCTTTGGT-GAGCTGGT 963 Query 64771 CGACCTGGCCGTGTCGCAGGGCCTG-GTGAAGAAGTCGGGCGCCTGGTTCAAGTAC---G 64826 |||||||| |||| ||| ||| |||| ||| |||| || |||| || ||| | Sbjct 964 CGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAG-CGGGTGCATGGTACAGCTACAATG 1022 Query 64827 GGGACAAGA 64835 | ||||||| Sbjct 1023 GCGACAAGA 1031 >seq430283 Length=268 Score = 86.0 bits (94), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 64193 CAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTA- 64251 ||||||||||| |||| ||| || | |||||| || |||||| | || ||||| | ||| Sbjct 16 CAGAAGGCCGGCGGCACCGCGGCGTTCATCGATGCCGAGCACGCGCTCGACCCGGTGTAT 75 Query 64252 --CGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGC 64309 ||||| |||||| || || |||| | || || | |||||||| || ||| Sbjct 76 GCGGCCAA---GCTCGGCGTCAACGTCGAGGATCTGCTGCTCAGCCAGCCGGATACCGGC 132 Query 64310 GAGCAGGCCCTGGAGATCGTTGACCTCCTCGT 64341 |||||||| |||||||||| ||| | || || Sbjct 133 GAGCAGGCGCTGGAGATCGCCGACATGCTGGT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231386765748131