Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq1462 154 2e-32 seq260686 141 1e-28 seq65234 120 3e-22 seq161181 107 2e-18 seq286911 102 8e-17 seq189010 102 8e-17 seq462907 89.7 5e-13 >seq1462 Length=4781 Score = 154 bits (170), Expect = 2e-32 Identities = 337/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 || ||||| | || ||| | || ||| | |||||||| | |||||| | ||| ||| Sbjct 1490 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 1431 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || || ||||||||||| || | |||||| | |||||||| || || ||||| Sbjct 1430 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 1371 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || | | | |||| | ||| | ||||| || || || ||| || || || || ||| Sbjct 1370 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 1311 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | ||||||||| || |||||||| || | | || ||||| ||| |||| || Sbjct 1310 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTG---TTTGTAGAACGGG 1254 Query 140359 ATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATACAT 140417 ||| || ||||| | |||||||| | | || ||| ||||| |||| Sbjct 1253 ATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATAC-G 1195 Query 140418 TCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGTTT 140475 ||||| || | ||| || || || |||| ||| | ||||| | ||| || | Sbjct 1194 GCCAGCATTGATACCGATCCCTGCGCGTT--GTGAAACGTATTTAACGATAGCACTAGAA 1137 Query 140476 ACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGG 140535 || || ||| ||| | |||||||| | || |||| ||||| || ||||| ||| Sbjct 1136 GTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGG 1077 Query 140536 CGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTTAGAT 140595 |||||||| || ||||| || ||||| ||||| ||||| | ||||| | | | || Sbjct 1076 CGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGAC 1017 Query 140596 ACGGCATTATAGAAACG 140612 ||||||| ||| || || Sbjct 1016 ACGGCATCATAAAAGCG 1000 >seq260686 Length=13603 Score = 141 bits (156), Expect = 1e-28 Identities = 337/501 (67%), Gaps = 20/501 (4%) Strand=Plus/Minus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 |||||||||| || || | || || | ||| || | | ||| || | ||| | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || || || || | || || | ||||| | ||||| || ||||||||||| Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || |||||| |||| ||||| |||||||| || || ||| ||| || ||||| || ||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | |||||| ||||| || || || || | | || ||||| || |||| ||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG---CTTATAGAACGGA 5402 Query 140359 ATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAACCTTCAGCAC-GATAC 140415 || ||| || || ||| ||||||| ||| ||| || |||| ||| | Sbjct 5401 ATGCAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGC 5344 Query 140416 ATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA----TATTTGATGATTGCTTT 140471 || ||||||| || |||||||||| ||||| | || || | || || | Sbjct 5343 -GACCGGCGTTAATGCCGATACCGGCAC----GCTGAGAAACGTACTTCACAATCGCGCT 5289 Query 140472 GTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAA 140531 | || ||||| ||||| || ||||||| ||||| | ||||| || ||||| Sbjct 5288 GGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAA 5229 Query 140532 CTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTT 140591 |||||| ||||| || || || |||| ||||||||| || ||||| ||||||| | | Sbjct 5228 CTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGT 5169 Query 140592 AGATACGGCATTATAGAAACG 140612 || | |||| |||||||| Sbjct 5168 GGAGATCGCATCGTAGAAACG 5148 >seq65234 Length=1614 Score = 120 bits (132), Expect = 3e-22 Identities = 305/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 140176 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 140235 |||||||| ||| ||||||| || || || | | ||||| |||| ||| |||| || Sbjct 659 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 718 Query 140236 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCG 140295 || | || | | ||||| | ||| |||||||| || || || | | ||| || || Sbjct 719 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 778 Query 140296 CCACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 140354 || || | || || ||||||||||||||||| || | ||| | ||| ||| | || Sbjct 779 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTTTATAAAA 837 Query 140355 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 140414 |||||| || |||||| |||| ||| | || | ||| ||| ||| Sbjct 838 AGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA-- 895 Query 140415 CATT---CCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTT 140471 ||| |||||||||| || || || || |||| | |||||| | ||||| | Sbjct 896 -ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACT 954 Query 140472 GTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAA 140531 || ||||||||| || | | |||| | | |||||| | || |||||||| || Sbjct 955 AGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAA 1014 Query 140532 CTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTT 140591 || ||||| || || | ||| || | |||||| || || || ||||| || | | | Sbjct 1015 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 1074 Query 140592 AGATACGGCATTATAGAAACGGATAATATGCTTAAGACGA 140631 || | |||||||| || || ||||| || | |||| Sbjct 1075 GGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 1114 >seq161181 Length=1368 Score = 107 bits (118), Expect = 2e-18 Identities = 178/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 63196 ATAATTTTCCCAGGCAAATTCTCGGAACCAGCCTGATGTAATACTTGTGCACACTTTT-T 63254 |||||| | ||| ||| |||| |||||||| || ||| || || || || ||||| | Sbjct 680 ATAATTGTTCCAAGCATATTCACGGAACCAACCACTTGTGATGCTAGTACAAACTTTCAT 621 Query 63255 CAAGAGCCATTTTAAAGCT-TAACTCTGAACCAGGTTTAAAGTTATTAGGAATCTGCGAA 63313 |||| || | || ||| || |||| || | | ||||| |||| | ||||| || | Sbjct 620 CAAG-GCAAGTTCAAAACTATAACG-TGCAGCTGGTTTGAAGTCAAACGGAATTTGGCTA 563 Query 63314 CGCTCTAAAGCTAATACACATGCTTCTTCATATACACCAGCTAACTGAATTTCTTTAGGT 63373 ||||| | ||| | |||||| | ||||||||| || ||| | |||| |||| | | Sbjct 562 CGCTCAAGAGCAAGTACACAAGTTTCTTCATAAACCCCAAACAGACGAATCTCTTCATCT 503 Query 63374 AGAGCCATGAACTTCTCTTTAGAAGTCATTACTTGAGAATCATCTTTCATGTAATATTTG 63433 | ||| | || || |||||| ||||| ||||| | ||||||||||||| | || Sbjct 502 ACAGCAAAAAATTTATCTTTACTGGTCATCACTTGTTCACCATCTTTCATGTAGAAAGTG 443 Query 63434 TATGCTGGCTGA 63445 ||||| || ||| Sbjct 442 TATGCAGGATGA 431 >seq286911 Length=6367 Score = 102 bits (112), Expect = 8e-17 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 67174 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 67233 ||||||||||||| | |||| |||||||||| |||||| ||||||||||||| ||||||| Sbjct 5711 AATTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 5770 Query 67234 ATCCATCTGAGCTAAAGGGCC 67254 | ||| ||||||||| ||||| Sbjct 5771 AACCA-CTGAGCTAAGGGGCC 5790 >seq189010 Length=996 Score = 102 bits (112), Expect = 8e-17 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 67173 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 67232 || ||| |||||||| ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 769 TATTTTAATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 828 Query 67233 TATCCATCTGAGCTAAAGGGCC-TTTGTTTATG 67264 | ||| ||||||||||||||| | | |||||| Sbjct 829 TGACCA-CTGAGCTAAAGGGCCATATATTTATG 860 >seq462907 Length=336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 67174 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 67233 ||| ||||||||| ||||| ||||||||| |||||| ||||||||||||| |||||| Sbjct 18 AATCTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCT 77 Query 67234 ATCCATCTGAGCTAAAGGGCCT 67255 | ||| |||||||| |||||| Sbjct 78 AACCAACTGAGCTATGGGGCCT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515359029820760