Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq1462 145 1e-29 seq260686 140 5e-28 seq65234 140 5e-28 seq498467 100 4e-16 >seq1462 Length=4781 Score = 145 bits (160), Expect = 1e-29 Identities = 328/491 (67%), Gaps = 4/491 (1%) Strand=Plus/Minus Query 236197 GGACTGAATAGCGTGATGTAATCGTTATTCACAAGACGCTCAAGCATCAATCGACTGATT 236256 ||||||||||||| ||| | || || || ||||| | | ||| | | ||||| Sbjct 1490 GGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGATT 1431 Query 236257 GATACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGA 236316 ||| | ||| || || ||||| | |||||| |||||||||| ||| || ||||| Sbjct 1430 TGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGG 1371 Query 236317 ACTAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCA 236376 ||||| | |||||| ||| |||||||| || |||||| || ||||| ||||| || Sbjct 1370 ACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCG 1311 Query 236377 CGTACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATT 236436 ||||| || ||||| || || ||||| || || || || |||||||| |||| || || Sbjct 1310 CGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATA 1251 Query 236437 ACACCAGTGTGACGAATCTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCAC 236494 ||| || || | ||||| ||| | | ||| ||| |||||||| | Sbjct 1250 CAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTG--CCTAGCGCACGAATACGGC 1193 Query 236495 CGCCATTCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTT 236554 | |||| | |||||| ||||| || | || ||| | || || | ||| Sbjct 1192 CAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGG 1133 Query 236555 CATTGATTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTG 236614 | ||||| || | || ||||| | || || || || || || || ||||| | Sbjct 1132 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 1073 Query 236615 TCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTG 236674 |||| || || || || ||||| || || || ||||| |||| ||| ||||| || | Sbjct 1072 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGG 1013 Query 236675 CATTGTAGAAG 236685 ||| || ||| Sbjct 1012 CATCATAAAAG 1002 >seq260686 Length=13603 Score = 140 bits (154), Expect = 5e-28 Identities = 290/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 236265 GTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAG 236324 |||||| | |||||| | ||||| ||||||| || |||||||||||| || | ||| Sbjct 5570 GTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGCAG 5511 Query 236325 TTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACC 236384 |||| ||||| | ||||| || ||||| || ||||| ||||| || || || || Sbjct 5510 GCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACGCC 5451 Query 236385 ACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGT 236444 || ||||| || || || ||||| || || ||||| || |||| ||||| || || Sbjct 5450 GCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATGCAGCCGGT 5391 Query 236445 GTGACGAAT--CTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCACCGCCAT 236500 ||| |||| ||||| || | | |||||| ||||| || |||| | | Sbjct 5390 GTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCC--AGCGCACGGATGCGACCGGCGT 5335 Query 236501 TCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGA 236560 | | |||||||| ||||||| | || ||| | ||||| | | | | || | Sbjct 5334 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCGTTAA 5275 Query 236561 TTGAATGCAAAG-AGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGG 236619 | |||| ||| | |||||| | |||||| || || || || |||||||| |||||| Sbjct 5274 TGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 5216 Query 236620 GTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTG 236679 || || ||||| | |||||| || ||||| | |||| || || || | |||| | Sbjct 5215 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGCATCG 5156 Query 236680 TAGAA 236684 ||||| Sbjct 5155 TAGAA 5151 >seq65234 Length=1614 Score = 140 bits (154), Expect = 5e-28 Identities = 292/426 (69%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 236266 TAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAGT 236325 || ||||||||||| | | |||||||||| ||| | || || || | |||||| | Sbjct 674 TAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 733 Query 236326 TTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACCA 236385 ||||||| ||||| ||||| || |||||| | ||| || || || || | || ||| Sbjct 734 TTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCA 793 Query 236386 CCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACA-CCAGT 236444 ||||||||||| ||||| || || |||| |||||||| | || |||| |||| || || Sbjct 794 CCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAA-TACATCCGGT 852 Query 236445 GTG--ACGAATCTCACCTGAACGA-ACGACTGCCCCTTCAGCACGAATCGCACCGCCATT 236501 || | | |||| | | || | |||| ||| ||| ||||| ||| | || Sbjct 853 ATGAAATGCTTCTC-CATTTCTGATAGGACT--TCCTAAAGCTCGAATTTGACCAGCGTT 909 Query 236502 CACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGAT 236561 | || || ||||| || | | || || ||||||||| ||| |||| || Sbjct 910 AATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAAT 969 Query 236562 TGAATGCAAAGAGTCGCCTGATTCAATCTTAACACAC--GAACTAAACTGGCGTGTCGGG 236619 || | ||| || | |||||| ||||||||| |||||||| || || || || Sbjct 970 AGAGTTTAAATTATCTGCACATTCAA--TTAACACACAAGAACTAAATTGACGAGTTGGT 1027 Query 236620 GTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTG 236679 || | || |||| |||||||||||| |||| || | ||| ||| |||| |||||| Sbjct 1028 GTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTA 1087 Query 236680 TAGAAG 236685 || ||| Sbjct 1088 TAAAAG 1093 >seq498467 Length=2746 Score = 100 bits (110), Expect = 4e-16 Identities = 233/350 (67%), Gaps = 1/350 (0%) Strand=Plus/Plus Query 125179 CACACGTA-CACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCA 125237 ||| |||| || | |||||||||||| || || ||| | || | || |||| Sbjct 459 CACTCGTAGCATTCATCAATCGGGGTGTTGGTGCCGTAATAGGGCACGCGGCTGTAGCTG 518 Query 125238 TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAA 125297 |||||||| ||| ||| || | || | ||| | | ||||||||| |||| | || Sbjct 519 TAATCCCAGACGTCCTCCAGTGCCTTCAGGTTATGCTGGATATTCGGGTACTCGCCGTAG 578 Query 125298 CAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAAT 125357 ||||| ||||| ||||| || || || | |||||||| || ||||| || | Sbjct 579 CAGATAAAACCGCCGTTGGCGATCGGCGGATAGCCCGCTTCAAAGTCGATTTTGTCGTAC 638 Query 125358 GGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTG 125417 || || || || || ||||| | ||| || ||| ||||| || ||||||| || Sbjct 639 GGATTAACCTTTTTCTCAACGTCGAGGTGGAAGCTGTTGGTGTAGTAACCTTTGTCGGTG 698 Query 125418 ATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGAT 125477 | || | | || || ||| | |||||| || ||||| || || || || | Sbjct 699 ACGCCCGGCACCACGCCAAATTCGGCGGCGTCGAGGCGGCAGAAGCGGTCGCACAGGTTT 758 Query 125478 TCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCA 125527 || || || || |||||||| ||||| |||||| | ||| || ||||| Sbjct 759 TCGCTCGGCGTGCTGTACAGGCTGAAGCCGTAGTCGGTCTCCTCCTTCCA 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788800369175680