Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq65234 156 5e-33 seq93888 113 5e-20 seq260686 107 2e-18 >seq65234 Length=1614 Score = 156 bits (172), Expect = 5e-33 Identities = 248/353 (70%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 143969 CCTTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAA 144028 ||| | || ||||| | ||| | | |||||||| ||| | |||||| || || ||| || Sbjct 707 CCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAA 766 Query 144029 GCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAA 144088 |||| || || || || | | ||||||||| ||||| ||||| || || | ||||| Sbjct 767 ACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAG 826 Query 144089 TGTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCT 144148 ||||| | || |||||| |||||||| |||| || | | ||| || ||| Sbjct 827 TGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCT 886 Query 144149 TCAGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATT 144208 ||| ||||| |||| |||| || || || || || |||| ||||| |||| | Sbjct 887 AAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACA 946 Query 144209 ATTGAGTTAGCAGTTTTGTTAATAGA-TTTCAGTGAGTCGCCTGCTTCAATAACCACACA 144267 |||| ||| || |||||||| ||| | | | || | |||||| | |||||| Sbjct 947 ATTGCACTAGTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACA 1005 Query 144268 AGAACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTA 144320 ||||||||||||||| |||||||| | | |||| | |||||| || || |||| Sbjct 1006 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA 1058 >seq93888 Length=1140 Score = 113 bits (124), Expect = 5e-20 Identities = 186/264 (70%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 145529 TTGTTCAACGTGGTTAGAATAGATGTGCGTATTGCCGCCTGAGAACACTAAATCGCCTGG 145588 |||||| | ||| |||||||||| |||||||| ||| |||| | || |||||||| | Sbjct 284 TTGTTCTAAGTGATTAGAATAGAGGTGCGTATCGCCCCCTGTCCAAACAAAATCGCC--G 227 Query 145589 AATA--AGATTACACATCTTAGCTACAATATGCACAAG-AGCGGCGTAAGAGGCGATATT 145645 | | |||| |||| || ||| || ||||| || || |||| | || ||||||||| Sbjct 226 ACTTCGAGATCACACTGCTGAGCGACCATATGGACCAGTAGCG-CATAGCTGGCGATATT 168 Query 145646 AAATGGCAATCCTAAGAACACGTCAACAGAACGCTGATACCACTGGAGGTCAAGATGACC 145705 ||| || || ||||| || || ||| ||| |||||||| |||| || | || Sbjct 167 AAAGGGTAAGCCTAAAAAGACATCACAAGAGCGCTGATAGAGCTGGCAACTGAGTTTGCC 108 Query 145706 ATTACGGACGTTGAACTGGTAAAAACAATGGCATGGTGGAAGAGCCATCTGGTTAATTTC 145765 ||| ||||| ||| ||| |||| |||||| |||| || ||||| | | | || Sbjct 107 ATTCACGACGTAGAATTGGAAAAAGGCATGGCAAGGTGCCAGCGCCATTTTATCTAACTC 48 Query 145766 AGCAGGGTTCCATGCTGATACGAT 145789 || |||||||| |||||||| Sbjct 47 TCCAACATTCCATGCCGATACGAT 24 >seq260686 Length=13603 Score = 107 bits (118), Expect = 2e-18 Identities = 292/447 (65%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 143911 CATAAGGTCGTTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACC 143970 ||| || | ||||| ||| | |||||||||||||| || | ||||| | || || || Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 143971 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 144030 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 144031 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 144090 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 144091 TTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTC 144150 || |||| ||||| ||||| || |||| || || || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 144151 AGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTAT 144210 ||||| || ||| |||| || || ||||||||||| | ||||| ||| | | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 144211 TGAGTTAGCAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGA 144270 | | | | || |||||| || | || |||||| ||||| | || || || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 144271 ACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTG 144330 || || || || || || || || | || | |||||| || || || | |||| || Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTT 5175 Query 144331 ACGGGTACTTACAGCATCATAAAAACG 144357 | ||| | ||||| || ||||| Sbjct 5174 AAAGGTGGAGATCGCATCGTAGAAACG 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542153972374920