Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq260686 143 3e-29 seq65234 138 1e-27 >seq260686 Length=13603 Score = 143 bits (158), Expect = 3e-29 Identities = 300/447 (67%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 142849 CATAAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCAACGCC 142908 ||| || | ||||| ||| | ||||||||||||||||| | ||||| | |||||||| Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 142909 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 142968 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 142969 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAATG 143028 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 143029 CTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTTC 143088 ||| |||| ||||| ||||| || ||||||| | || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 143089 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTAT 143148 ||||| || ||| |||| || || ||||| ||||| | ||||| |||| | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 143149 TGAGTTAGCAGTTTTATTAATTGATTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGA 143208 | | | | || ||||| || | || ||| || ||||| | ||||| || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 143209 ACTAAACTGACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTG 143268 || ||||| || |||||||| || | || | |||||| || || |||| ||||||| Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTT 5175 Query 143269 ACGGGTGCTAACAGCATCATAAAAACG 143295 | |||| | ||||| || ||||| Sbjct 5174 AAAGGTGGAGATCGCATCGTAGAAACG 5148 >seq65234 Length=1614 Score = 138 bits (152), Expect = 1e-27 Identities = 291/433 (67%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 142874 TAGTCCATATGACGAATACGGTTCTCATCAACGCCTTTGTTGTTTTTCAGAACGAGCAGA 142933 || || | |||||| | | || || |||| ||| | || ||||| | ||| | | | Sbjct 674 TAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 733 Query 142934 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 142993 ||||||| ||| | |||||| || || ||| || |||| || || || || | | |||| Sbjct 734 TTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCA 793 Query 142994 CCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAATGGAATAACACCGGTA 143053 ||||| ||||| ||||| ||||| | ||||| || || | || |||||| |||||| Sbjct 794 CCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTA 853 Query 143054 TGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATA 143113 || |||| || | | ||| || ||| ||| ||||| |||| |||| || Sbjct 854 TGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATG 913 Query 143114 CCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGCAGTTTTATTAATTGAT 143173 || || ||||| |||| ||||| ||| | | |||| ||| || |||||| || Sbjct 914 CCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAG 973 Query 143174 TTCAGCGAGTCACCTGC---TTCAATAACAACGCAAGAACTAAACTGACGGGTCGGGGTA 143230 || | | | | |||| |||||| | || ||||||||||| ||||| || || || Sbjct 974 TTTA---AATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTT 1030 Query 143231 CGAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTGACGGGTGCTAACAGCATCATAA 143290 | | || | |||||| || || || | || || | | ||| || |||| |||| Sbjct 1031 CTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATAA 1090 Query 143291 AAACGAATAATAT 143303 || || ||||| Sbjct 1091 AAGCGCTGAATAT 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541982250692280