Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq110996 113 1e-20 seq165036 91.5 5e-14 >seq110996 Length=37877 Score = 113 bits (124), Expect = 1e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||| ||| | ||||||||| || ||||| || ||||| ||||| || ||||| | Sbjct 7073 GAAGTCGACGTCAAAGTCGGGCATCGAAACACGTTCCGGGTTGAGGAAACGTTCGAACAG 7132 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || | | ||||| |||||||| || || ||||| || |||| || || Sbjct 7133 CAGGTCAAACTCCAGCGGGTCGAGGTCGGTAATTTTCAGTGCGTAGGCCACCAGAGAACC 7192 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || || || || || || || |||| |||| ||||||| ||| |||||| Sbjct 7193 GGCACCGGAACCACGTCCCGGCCCCACGGGCACGTCGTTATCCTTCGACCACTGGATGAA 7252 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGT 39310 || |||| |||||||| |||||| |||||||||||||||| || Sbjct 7253 TTCCATCACGATCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATCACGT 7302 >seq165036 Length=2215 Score = 91.5 bits (100), Expect = 5e-14 Identities = 215/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 37941 CTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGC 38000 ||| ||||| | ||||| |||||| || ||| |||||| || |||| |||| ||||| Sbjct 1380 CTCAGCCGGATGGTGCGCCTTCAGCCACAGCGTCTGGTAGGAGACGAGTGCGTAGGCCGC 1439 Query 38001 AGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCG 38060 |||||| | |||||| ||| | || || || || | | | || || | | | | Sbjct 1440 AGAGTGTGACTTGTTAAAGCCATAACCTGCAAATTTTTCTACCAGATCGAAGATCTTC-- 1497 Query 38061 GATGG-CAGC-CTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCC 38118 || | ||| | ||| | | | | || | || || | | | || |||| | Sbjct 1498 -ATCGACAGTTCCCCGTCGATGCCCATACTTTCAGCACCGTCGCGGAATACA-GAACGCT 1555 Query 38119 --TTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGAC 38176 ||||||| | ||||||| ||||| || |||||||||||||| || | || || | Sbjct 1556 GTTTGGCCATCTCCTCGGGTTTCTTTTTACCCATGGCGCGACGCAGCATATCCGCACCGC 1615 Query 38177 CGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA 38236 | || ||||| |||| || | ||| || || | |||||| ||||| |||| ||||| Sbjct 1616 CCAGCGTGTAACCGGAGAGAACCTGGGCGATCTGCATCACCTGTTCCTGATAGAGGATGA 1675 Query 38237 GCCCGAAGGTCGGGTCCAG 38255 ||| ||||||| ||||| Sbjct 1676 TGCCGTAGGTCGGTTCCAG 1694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158768368465422