Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028894.1 Length=170336 Score E Sequences producing significant alignments: (Bits) Value seq1462 141 1e-28 seq65234 120 3e-22 seq260686 111 2e-19 seq185877 82.4 8e-11 >seq1462 Length=4781 Score = 141 bits (156), Expect = 1e-28 Identities = 312/463 (67%), Gaps = 6/463 (1%) Strand=Plus/Minus Query 140746 CCAGTCGTTCCATCATCAGGTTATTCAACTGGACACCATAGTCCATATGCCTGATACGGT 140805 |||| |||| ||| || || || | || || || || || | || | || ||||| Sbjct 1459 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 1400 Query 140806 TTTCTTCAACGCCTTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAA 140865 | ||||||| || ||| || ||||| || | ||| |||||| |||||| ||||| | Sbjct 1399 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 1340 Query 140866 TAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAG 140925 |||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 1339 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 1280 Query 140926 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCGA 140985 |||| ||||| ||||| ||||||| ||| ||| ||||| ||||||| || || Sbjct 1279 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 1220 Query 140986 TTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGA 141045 || ||| |||||||| |||| | ||||||||||| |||| ||| | ||| Sbjct 1219 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTG--CGCGTTGTGA 1162 Query 141046 TA--TATTCGATGATTGAATTAGCAGTCTTATTGATTGACTTCAGGGAGTCAGCCGC-TT 141102 | |||| | ||| | | ||| ||| ||||| || | | | || ||| | | Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATC-GCCACACT 1103 Query 141103 CGATAACCACGCAGGAACTGAACTGTCTTGTAGGTGTTCTGGCGCCCGCCATGATAGGTG 141162 |||||| |||||| || ||||| || | || || || | | || |||||||| || | Sbjct 1102 CGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCG 1043 Query 141163 TGGGCAACGAAACCTGTCGTGTAGATACTGCATCATAAAAACG 141205 | || || |||| | || || || ||||||||||| || Sbjct 1042 TAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 1000 >seq65234 Length=1614 Score = 120 bits (132), Expect = 3e-22 Identities = 267/401 (67%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 140766 TTATTCAACTGGACACCATAGTCCATATGCCTGATACGGTTTTCTTCAACGCCTTTGTTG 140825 ||||| | || ||| |||| || | ||| | | | |||||||||| ||| | || Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 140826 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCA 140885 || || | ||| | ||||||||||| ||| | |||||| || || ||| || |||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 140886 GCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAG 140945 || || || | | ||||||||| ||||| ||||| || || ||||||| ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 140946 AACGGAATAACACCAGTATGCTTGACTTCACCCATACCGATTTTCGAACCTTCAGCACGA 141005 || |||||| || ||||| |||| || | | ||| ||| ||| ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 141006 ATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGATATATTCGATGATTGAATTA 141065 || ||| |||| || || || ||||| || | | | ||||| | |||| | || Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 141066 GCAGTCTTATTGATTGACTTCAGGGAGTCAGCCGCTTCGATAACCACGCAGGAACTGAAC 141125 | || ||| || || || | || || ||| || | ||| || ||||| || Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAAT 1015 Query 141126 TGTCTTGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGG 141166 || | || |||||||| | || | ||| || |||||||| Sbjct 1016 TGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGG 1056 >seq260686 Length=13603 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 140715 GGACTAAACAGAGTGATGTAATCATTCTTGGCCAGTCGTTCCATCATCAGGTTATTCAAC 140774 || || |||||||| || | ||| ||| ||| || | |||||| || |||| | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 140775 TGGACACCATAGTCCATATGCCTGATACGGTTTTCTTCAACGCCTTTGTTGTTCTTCAGA 140834 || || || ||||||||||| | | ||||| |||||||||| |||||||||||| Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 140835 ACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140894 || || | |||| ||||||| |||||| || || || | || || || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 140895 CGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 140953 || | || || || || || || || || || || ||||| || || |||||||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT 5400 >seq185877 Length=28917 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52860 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52919 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 13018 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 12959 Query 52920 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52977 || | ||| ||||| |||| |||||||| || ||||||||||| | || || Sbjct 12958 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 12901 Query 52978 TAACACATAACGGGGATATTATAATTATCAACCACT 53013 ||||| | || || |||| || ||| |||||| Sbjct 12900 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 12865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541546586423360