Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq248802 829 0.0 seq129892 480 2e-131 >seq248802 Length=12257 Score = 829 bits (918), Expect = 0.0 Identities = 1244/1749 (71%), Gaps = 55/1749 (3%) Strand=Plus/Minus Query 5012 CAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCAT 5071 ||||||||| || ||||| | |||| ||||||| ||||||||| |||| | ||| Sbjct 3757 CAGGCCGATGTTCTTACGGTGCTCGGCCAGGCGGTCGATGCCGTTCACGATCTCGACCAT 3698 Query 5072 GTTGATGGTGTCGATTTCGACCAGCTCCTTACCGT-CCATCGTCAGCCGGAAATAGGTGC 5130 ||||| ||||||||| || | |||| | || |||| ||| | ||||| | | ||||||| Sbjct 3697 GTTGACGGTGTCGATCTCAATCAGCGCTTTGCCGTTCCAGC-TCAGCTTGTAGTAGGTGC 3639 Query 5131 AGACCACGGAGATTTTCGACTCGGTGTCTTCTCCCTGTTTACCCTCGCCGGTGTCGATTT 5190 | || |||||| | ||| | || || ||||| || | ||||||| ||||| | Sbjct 3638 ATTTGGTGGTGATTTTGGTTTCGTTCTCCTCACCCTGCTTGCTCTCGCCGAAGTCGAACT 3579 Query 5191 CTTTCTGACGTCCACGCATGACCACCTCGACGGCCACCGTTTCGCCGGTATCGTCGCGCT 5250 | || || |||| ||||||| || || | || ||| |||| ||||| |||| Sbjct 3578 GCTGATGCTTGCCGCGCAGCTCCACCTCCACCGCGATGGTCTCGTCGGTGTCGTCACGCT 3519 Query 5251 GGTAAGAGCCTGCAAAACGAATCGGCAC---GGCATCCACACCGGTTGCGGCGTAAAGCT 5307 |||| || || ||| || | |||||| ||| |||| || | || ||| Sbjct 3518 GGTAGGAACCCATAAAGCGCAGCGGCACCGTGGCG-CCACCCCACTGGCTC-----AGCA 3465 Query 5308 CCCAGATAACCGAATCCGGGAAGCCACCCAGCGACCACTCCATTGACAGCGCATCGTCAT 5367 | | | | ||| |||| || | | |||||||| ||||||||| || | Sbjct 3464 CGCGG-TCGTCGAGGCCGG--AG------ATGGTCCACTCCAGATCCAGCGCATCATCTT 3414 Query 5368 CAAGGCCGAGGTCTACCGGTGCGCTGCCGTTCATCCCCGCACCGCGATAGTTTTCGAGCT 5427 | ||||| || | | || ||||||||| || | ||||| || ||||||| Sbjct 3413 CCAGGCCATTATCGATATGCGCCACGCCGTTCATGCCGCCGCCGCGGTAAGGGTCGAGCT 3354 Query 5428 TACGGGTCAGTTTTGGCAGCGTGACGGACTTTGCAACGCCCTGATAGCTGTAGCCGTTCA 5487 | || | ||| || |||||||| | || | | || ||||||||||||| | | | Sbjct 3353 TGCGCGCCAGCTTCGGCAGCGTCAGTGAGGTCACCACACCCTGATAGCTGTTGGCATCGT 3294 Query 5488 GAAAGACGTTCATTAACTTGAGTTTGCGCGGCATTGCCATCGGTCAGGCTCCTTAATTGC 5547 ||| | |||| | || ||||| |||| |||||| | ||||||| || Sbjct 3293 TAAACAAATTCAGGTATTTCAGTTTCTTAGGCAGTGCCATGAGGGTTTCTCCTTA---GC 3237 Query 5548 TTTTAACCGAAGTGACCAGATTTGCCAGGTATTTATCGGTAATACGCTGGCGCAGGGTCA 5607 | || || |||| | | | || |||||||| | |||||||| ||||| |||||||||| Sbjct 3236 TGTTCACAGAAGCGGCGAAGTTCGCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCA 3177 Query 5608 GGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAGTCGATATACAGTTTTCCGGCCTTGA 5667 | | ||| || || ||||||||||||||||| |||||||||||||| || ||||| || | Sbjct 3176 GATCTTCCAGCGGCGGCACCGGGGTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCA 3117 Query 5668 GGGTTTCCGCATCGTTGGATTCTTCGCTGAACCAGCAGGTCGCATCCACGATATAGCCGT 5727 || | ||| ||||| |||| | |||||||| | || ||| | ||| ||| Sbjct 3116 GGCTCTCCTGGCTGTTGGCGCTTTCGTCGTACCAGCAGTTGGCGCCCAGCAGATAACCGG 3057 Query 5728 TTGTTTTCAGCTCACGGAATTTGGCATTGATGCCGTCAACGATGTCGCGAATCAGCGTTG 5787 | ||||||||||||| ||||| ||||| ||| | | |||||||| | |||||| | Sbjct 3056 CGTTGATCAGCTCACGGAACTTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCG 2997 Query 5788 CGGTGATGGGCTTGTCCACCGCCCACATATGCGCCTCAGCCATCGTGTCGGCCAGCACCT 5847 || | |||||||| |||||||||||||| || ||||| |||||||| | ||||| Sbjct 2996 GCGTCAGCGGCTTGTCGTTGGCCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCT 2937 Query 5848 GCGCGGTGCGGGTGTAGTTTTCAAAGAGGAACAGCGGGTCATCAGAGCAGGTACGGTTAC 5907 |||| | ||||||| ||||||||||| ||||||||||||||| ||||| ||||| | Sbjct 2936 GCGCCGAGCGGGTGAAGTTTTCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGC 2877 Query 5908 CCCAGAATCGGAAACCGTCGCGGCGAATCAGCGTAGTGACGCCTGACTCGTTAAGCAGGT 5967 ||||||| ||||||||||| ||| |||||||| ||||||| | || || ||||| | Sbjct 2876 CCCAGAAGCGGAAACCGTCTTTGCGGATCAGCGTGGTGACGCTGGCTTCATTCAGCAGAT 2817 Query 5968 CAGCATCGGTGCCGGACTCCTGCAAATCCCAGAATACAGATGCGCTGATGCCGGTAACAC 6027 | |||||||| || || ||||| ||||||||||| || ||| | |||||| || | Sbjct 2816 CGGCATCGGTCCCCACCTGCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGC 2757 Query 6028 CGTTTACCCCGACGTTGGACAGCGTTTTATGCCAGCC-CTGCTCCTGGTCGATTTTAGCG 6086 |||| || |||||||| ||||| |||||||||||||| ||| || | |||||||| ||| Sbjct 2756 CGTTGACGCCGACGTTCGACAGGGTTTTATGCCAGCCGCTG-TCGTTATCGATTTTGGCG 2698 Query 6087 CGCAGACCCAGCGCACGGGCGGTGGCATACGCGGTGGCGGTGGTACTGTTGACCGTATCC 6146 ||||| || || || |||||||||||||| || || | | | ||| | || || | | Sbjct 2697 CGCAGGCCGAGGGCGCGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTC 2638 Query 6147 CATGCGAGGAAATCCGGCCAGATGACCATCAGCTCACGCTGGCTGAAATTCTGGCGGTAG 6206 || |||| || || |||||||| ||||||||||| ||||||||||| || | ||| || Sbjct 2637 CAGGCGACAAAGTCGGGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATA- 2579 Query 6207 GCTT--TCACCTCGGAAATGGTTTTACAGCCCCATGCGCTGATATACCCGAAAGCGCGCA 6264 ||| | | ||| | ||||||||||| | || |||||| ||||| ||||||| Sbjct 2578 -CTTGAGCGCATCGCTTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCA 2520 Query 6265 ACTTCTGACACACTGATGCCAGTGCAACTGCCACCTCTTTGGTGTCCAGTCCCGGTACGC 6324 || ||| || | || ||||| || ||||| || | ||||| ||||| |||| Sbjct 2519 GCTGCTGGCAGATTGCCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGC 2460 Query 6325 CGAGAATACGCGGTTTAACACC--GGTTACCGACTCCGCCGCCAGCAGGGCTTTCAGTCC 6382 ||||||||||||| ||||| || ||| | | || |||||| ||||| ||||||| || Sbjct 2459 CGAGAATACGCGGCTTAACGCCAAGGT--CGGTCTGCGCCGCGAGCAGCGCTTTCATCCC 2402 Query 6383 GGTGTACTGACCGTTTTCGTCGGTGGTGCCGATGATATTGGAAACGGTCTGCGCGAGTTT 6442 |||||| | ||||| | ||| || ||||||||||||| ||| | Sbjct 2401 GGTGTAGCGGCCGTTAGCATCGCTGCCGCCGATGATATTG--------CTG-------GT 2357 Query 6443 CGTTTCCTCGTCGTCGCCGGTGCCGTCTTCCACACGCACAACAACGGTGACCGGTTTTGA 6502 ||| || | ||||| | || || || || ||||| || || || ||||| || Sbjct 2356 GGTTGCCGCTTCGTCTTC---ACCCTCCTCAACGCGCACCACCACCGTTACCGGCTTGCT 2300 Query 6503 CTGGTCGGCGATGGCCTGCAACGCTGCCGCCAGCGTGCCTTTTTTACCGGCCTTTGCAAT 6562 ||||||||| || ||||||| |||| |||||||||||| | |||||| || | | Sbjct 2299 CTGGTCGGCAATCGCCTGCAGCGCTTTCGCCAGCGTGCCGCTGACACCGGCTTTCCCCAC 2240 Query 6563 TGCGCTCTGCACATTGGTAATCAGCACCGGTTTATTGAGGGGGAAGATTTCCGCATCCGC 6622 || |||||| | ||||||||||||||| | ||||| ||||| | ||||| || Sbjct 2239 CGCCGCCTGCACGTCGGTAATCAGCACCGGCGTGTTGAGCGGGAATACGGTGGCATCAGC 2180 Query 6623 AT-CGCTGGCCGTGCAGACCAAGCCGACAATGGCAGTGGATACGGTGGAAATGACGCGGG 6681 || |||| || |||||||||| ||||||||| | |||||||| |||||||| ||||| Sbjct 2179 ATCCGCT-GCAGTGCAGACCATGCCGACAATAGAGGTGGATACCGTGGAAATACTGCGGG 2121 Query 6682 TGCCGTCGTTAATCTCCAGCACCTGCACGCCGTGATGATAGTCACTCATCCGT-TTA-AC 6739 | ||||| || || || | || | |||||||| ||||| | | |||| | ||| || Sbjct 2120 TTCCGTCATTGATTTCAACGACGCGTACGCCGTGGTGATAATTAGCCATCTTTATTACAC 2061 Query 6740 TCCGTGGTT 6748 ||||||||| Sbjct 2060 TCCGTGGTT 2052 >seq129892 Length=23088 Score = 480 bits (532), Expect = 2e-131 Identities = 1130/1688 (67%), Gaps = 41/1688 (2%) Strand=Plus/Plus Query 10584 TCCCGGGTAATGTTCAGGCCAATAAGGTGGCGGCTTGCAGGTTTGGCATCAGCAATCAGC 10643 ||| || | || ||||||| |||| |||||||| | ||||| || || |||||| Sbjct 58 TCCAGGTTGATTGTCAGGCCGGTAAGATGGCGGCTGACGGGTTTCGCGTCGCCAATCAAT 117 Query 10644 CGTTCCATTTCCTGATACATTGCCTCTGTGATACCGCTTTCCAGTACACCAATATCAAGC 10703 ||||||| || | ||||| |||| || || || ||||||||||||| | || ||| Sbjct 118 CGTTCCAGCTCGTTGTACATCTCCTCAGTAATGCCAGTTTCCAGTACACCGACGTCCAGC 177 Query 10704 CGGAAGGTGCCTGGCGGGTCACTGTTTTCCCACCACTCCGTCACGTTAATGAGATAGCCG 10763 | ||| || || || | | | |||| | |||||| || || | |||||||| || Sbjct 178 CTGAAAGTTCCAGGTGCGGCGTTGTTCTGCCACCATTCGGTAATACGGATGAGATACCCC 237 Query 10764 AGCGGCTCCACCACACGCCGGATTGCGCCGATAGTGCCTTTATGACAGTGGATGAAATAG 10823 |||||||||||||| || ||||| || ||| ||||| || | | |||||| || | Sbjct 238 AGCGGCTCCACCACCCGGCGGATCGCCGAGATGGTGCCCTTGCGGCGGTGGATAAACTGC 297 Query 10824 GCATCGCGGATAACGGCACGTTTGGTCGCTTCCGGCCACTTTTCATCCCACCTGTCGACC 10883 | || || || ||||| |||| |||||||||||| | |||||| | || ||| Sbjct 298 GAGGCGGCGACCACCGCACGCCGGGTCTCTTCCGGCCACTCCTGATCCCAGCGATCCACC 357 Query 10884 GAAAACGCCCACGCCAGCCACGGCAGCAGATTTGCCGGGCAGGTGTCCGGGTTCCACAGT 10943 || | ||||| || || | || ||||| |||||| || | |||||||||||| Sbjct 358 GACCAGGCCCAGGCGAGATAGGGGAGCAGCGGCAGCGGGCAAGTCTGCGGGTTCCACAGG 417 Query 10944 TCACGAATCCTGACCGGCGTTTTTTCAATTTCCGCACAGGCTTTTGCGGCGGCAACTTCA 11003 || | | |||||| | | | ||||||||||| |||||||| || || Sbjct 418 GTGCGCAGCGGCACCGGCAGCTGCTGCAGGCGCGCACAGGCTTCGGCGGCGGCCACCTCG 477 Query 11004 AGCGGTGATGAGCCGGTCGGCAGCAGTCGCGAATCACTCATCCGAGCCTCCGGTCACGA- 11062 ||| |||| |||||| |||||||| || ||||||||| || ||||| | ||| Sbjct 478 AGCTGTGACGAGCCGACGGGCAGCAGGCG---GTCACTCATCGGAACCTCCTACCGCGAT 534 Query 11063 CGCGGTATTCAGTACAGAAAGACGCCTGCGTACTGTTGAGCACAATGTCGGC--CAGTGG 11120 | ||| | || ||| | | |||||| || | | ||||| | || || ||| | Sbjct 535 CTGCGTA-GCGGTGCAGTACGCCGCCTGGGTTTTATCCAGCACCACATCAGCAGCAG-GC 592 Query 11121 TGCGGCCAGCTCGACACGCTGCACGCCTTCCACATGCAAAGCGGCATAAATGGCAGACAG 11180 ||| |||||||| || ||||| || || || || |||| || ||||| | || ||| Sbjct 593 TGC-GCCAGCTCTACGCGCTGGACACCCTCGACGTGCAGCGCCGCATACAGCGCTGACCT 651 Query 11181 ACGGATGTCGCGCCCCAGCCGGTGCTGTGCCGTGATATACGCTTCCAGCTTTTTCACAGC 11240 ||||| |||||||||||||| ||| || || | | | || ||||| | | Sbjct 652 GCGGATATCGCGCCCCAGCCGCGACTGGGCGGTTACAAAGGCCGCCAGCCGGGCTGCCGA 711 Query 11241 GGCAGCGCGAATGGGTTCGCTTTCGGGACCAGGGTAAAGGTAAAGCGTGGCGTTTATCTG 11300 ||| ||||| || || || || || || || || || | |||||||| | | | Sbjct 712 GGCGGCGCGGATCGGCTCCGCCTCCGGCCCGGGATAGAGAAACAGCGTGGCCTCAACGCG 771 Query 11301 ATATTCAACGATGGCGGCAGACTGCACGGTCACGCGGTCGGCCACCGGCCTGACGTCCTC 11360 || || ||||| || ||||||||| | ||||| || |||||||| | || ||||| Sbjct 772 GTACTCGACGATTTTTGCCGACTGCACGCTGACGCGATCCGCCACCGGGCGCACCTCCTC 831 Query 11361 ACCATTAAG---GGCGTTACGCACCACAGCCAGCAGGTCTTCGGATGCGACGCCGTTATT 11417 |||| || ||||| || || |||||||| || || || ||||| Sbjct 832 GTCATTCAGCGCCGCGTT---GACGACGGCCAGCAGTTCAGCGCTGGCCTCGCCGCGCCC 888 Query 11418 TTCACGTGACAGCACAGAGATGGTGACACAGGCAGGAGACGGACTGGTGACAGAAATATC 11477 |||||| |||||||| | || |||||| ||| |||||||| ||| || | | | ||| Sbjct 889 TTCACGCGACAGCACGGTGACGGTGACCACGGCCGGAGACGGGCTGATGGCGGTGACATC 948 Query 11478 GGCGACACGCCCGTCAGCACTGCGACCATGATACTGATAGGCTCCCACTGACCCGGCGAC 11537 || || || || || || ||||| | ||||| | |||||| || | | ||| || || Sbjct 949 CGCCACGCGACCATCGGCGCTGCGGGCGTGATATTCATAGGCCCCGCCCGGCCCCGCTAC 1008 Query 11538 GCTTAAGCCCTCAAAAGCCTGCTGAATACGCAGACGATAATCGGTGTCAGATTCCATCAC 11597 ||| | |||||||| ||||| || |||||||| | ||| ||| || | | Sbjct 1009 GCTCAGCCCCTCAAAGGCCTGGGCGATGCGCAGACGGAAGTCGTCGTCGCTCTCAAGCCG 1068 Query 11598 TGCCGGTGTCGGCGGAATGGTCGAATCATCTGCCGGGGTGATAATCAGGCGCGTGGTGTT 11657 ||||| |||||||| | || | |||||| || | | | ||| || ||| | Sbjct 1069 CGCCGGGGTCGGCGGCAGCGTGCTGTTATCTGCGGGTTTCAGCACCAGACGGGTGACGCC 1128 Query 11658 GTAATTGGCACCAATTACATCAAGGTCATTACCGGCAGCACAGGCCAGCATCACCGCCCG 11717 || ||| | |||| || || || | ||| || | |||| ||| || Sbjct 1129 GTTGTTGACCCCAAGCTGGTCGAGATCGCTGCCGCTGGCGAATGCCACCATGGTGGCTTT 1188 Query 11718 TGCGGCCTCATTCACACGCTGACGCCAGATAAGCTCACGATAAGCATTTTCCTCCAGCAG 11777 || || || || | ||||| ||| ||| | ||| || || || || ||||||||||| Sbjct 1189 CGCCGCTTCGTTAATGCGCTGGCGCAGGATCACCTCGCGGTAGGCGTTCTCCTCCAGCAG 1248 Query 11778 TTTGACGAGAGGCTCAGATTCCAGCGTCAGGGTACGGGCGACCGCCTCCTGCTGGTCTTC 11837 ||||||| ||||| || |||| || | ||| ||||| | ||||||||||| || | Sbjct 1249 CTTGACGATCGGCTCCGACGCCAGGGTTAAGGTGCGGGCTATCGCCTCCTGCTTATCGGC 1308 Query 11838 CGGG-----------TAAAGGGAAATCAGTGTCGC-CTTGCG-TTCAGCGAGAATGGTTT 11884 ||| || | | |||||| | ||| ||||| | | || | | ||| | Sbjct 1309 GGGGGGGGGGGGAGATAGCGCGCAATCAGCG-CGCTTTTGCGCTGCTGC-AACAGGGTCT 1366 Query 11885 CAAAGTCCAGCTCCTCGACCACATCCGGTGCGGGTAGCTGGTTCAGGTCGATAATCGGCA 11944 |||| |||||| | ||||| | | ||| ||||||| ||| | | || || | | || Sbjct 1367 CAAAATCCAGCGCTTCGACGATGTTCGGCGCGGGTAACTGACTTAAATCAATCGTGGCCA 1426 Query 11945 T-GGTTTCAACTCACAGGGATGGTTAACGAAAGTGGCTGGCCGGTGTCGTTGTGCTGGCC 12003 | ||| | ||||||| || |||| || |||| || ||| | | |||| | ||| Sbjct 1427 TAGGTGTTAACTCACTGGAATGGATAGGGAAAATG--TGGAC----TGGTTGCGGGTGCC 1480 Query 12004 GGTTAACGTGACCGTCATTCGCCCGTCAAAACTGCGCGCCG-TAGTGACGGATGAC-AGG 12061 | ||| || ||| ||| | |||||||| | | || | ||| | | || | || Sbjct 1481 GCTTAGCGCTACCTCCATGCTGCCGTCAAACC--CCGGCTGATAGCGGATGCTGTCGAGC 1538 Query 12062 GTGACGCGGGGTTCCCATTTCAGCACCGCCATGTAACAGGCGACCTTAATCTGCAACTCA 12121 |||| ||| || ||||| ||||| ||||||||| ||||| | ||||||||| Sbjct 1539 GTGATGCGCGGCTCCCAGCGCAGCAGCGCCATGTAGCAGGCCGACATAATCTGCAGGCGC 1598 Query 12122 AGCGCCGGGGTCTGCGGCTGGTCAATCATTGATGCCAGCAACGAGCCGTAATCACGACGC 12181 |||| | | ||||||||||||| | || | | ||||| ||||||||| ||||| ||| Sbjct 1599 AGCGTCTCGTTCTGCGGCTGGTCGAGCAGCGCCGACAGCAGCGAGCCGTAGTCACGGCGC 1658 Query 12182 ATCACCCGTGAGCCGACCGGTGTGCGCAGGATATCGCCGATACTCTGGCTGATATGCTCA 12241 |||||||| ||||| ||| || ||||||| |||| | ||||| |||||| || Sbjct 1659 ATCACCCGCGAGCCCTGCGGGGTCAGCAGGATGTCGCGCACCGACTGGCGGATATGGTCG 1718 Query 12242 AGGTCAGT 12249 | ||||| Sbjct 1719 ATATCAGT 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103819263120474