Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq65234 131 2e-25 seq260686 123 3e-23 seq161181 93.3 5e-14 seq185877 82.4 8e-11 >seq65234 Length=1614 Score = 131 bits (144), Expect = 2e-25 Identities = 293/440 (67%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 143094 TTATTAAGCTGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCCCTTGTTG 143153 ||||||| || ||| |||| || | ||| | | | |||||||||| || | || Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 143154 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 143213 || || | ||| | ||||||||||| ||| | |||||||| || ||| || |||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 143214 GCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 143273 || || || | | ||||||||| ||||| ||||| || || ||||||| ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 143274 AACGGAATAACACCAGTATGGCGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGA 143333 || |||||| || ||||| |||| || | | ||| ||| ||| ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 143334 ATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTG 143393 || |||| |||| ||||| || || || || | | | ||||| | |||| | | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 143394 GCCGTCTTATTAATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGAACTGAAC 143453 | || |||||| || || | || ||| ||| || | |||||| ||||| || Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAAT 1015 Query 143454 TGCCTGGTAGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGCAACGAAACCTGTCTTGTG 143513 || | || |||||||| | || | ||| || || ||||| | || | | ||| Sbjct 1016 TGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTG 1075 Query 143514 GATACTGCATCATAAAAACG 143533 || | ||||| |||||| || Sbjct 1076 GAAATTGCATTATAAAAGCG 1095 >seq260686 Length=13603 Score = 123 bits (136), Expect = 3e-23 Identities = 324/492 (66%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 143043 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGTCGTTCCATCATCAGGTTATTAAGC 143102 || || |||||||| || | ||| ||| ||| || | |||||| || || ||| Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 143103 TGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 143162 || || || ||||||||||| | | ||||| |||||||||| |||||||||||| Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 143163 ACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCA 143222 || || | |||| ||||||| |||||| | || || | || || || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 143223 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATA 143282 || | || || || || ||||| || || || || ||||| || || |||||||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 143283 ACACCAGTATGGCGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGAATCATACCA 143342 || || ||| ||||||| | ||| || ||||| || ||| Sbjct 5398 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 5339 Query 143343 ACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTGGCCGTCTTA 143402 |||| ||||||||||| ||||||| | | || | | || | ||| || Sbjct 5338 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 5279 Query 143403 TTAATTGACTTCAGGGAGTCAGCAGC-TTCGATAACCACACAGGAACTGAACTGCCTGGT 143461 ||||| || | ||| ||| || || || || | || ||||| |||||||| | || Sbjct 5278 TTAATGGAATCAAGGCTGTC-GCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGT 5220 Query 143462 AGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGCAACGAAACCTGTCTTGTGGATACTGC 143521 || || | |||| | ||| || ||||| |||| ||||| || ||||| | || Sbjct 5219 CGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGC 5160 Query 143522 ATCATAAAAACG 143533 ||| || ||||| Sbjct 5159 ATCGTAGAAACG 5148 >seq161181 Length=1368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 225/336 (67%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 61753 AAAAGGTTTAATCAAATGTTGGTTAGCCTTGAAACGTTTAACATAGTCTTCGCGACCCAG 61812 ||| ||||| | ||||||||| ||| ||||| | || || |||||| | |||| Sbjct 767 AAATGGTTTTAGCAAATGTTGATTACGTTTGAATCTTTCAATATAGTCATTTTCTCCCAT 708 Query 61813 GGTGTTGTACATATTAACCACTTCCTGGTAATGTTCCCAGGCATACTCACGGAACCATCC 61872 | |||| | || ||||| | |||| | ||| ||||| ||||||||||| || Sbjct 707 TCGCTCATACAAGTCAAGCACTTTGTCATAATTGTTCCAAGCATATTCACGGAACCAACC 648 Query 61873 AGAAGTAATGGAGGTACAGACTTTT-TCTAGTGCAATATGGAAGCTC--ACGGATGGAGA 61929 | || ||| ||||| ||||| || || |||| | || || ||| || || Sbjct 647 ACTTGTGATGCTAGTACAAACTTTCATCAAG-GCAAGTTCAAAACTATAACG--TGCAGC 591 Query 61930 TATATTGAACTCATTAGGAACCTGCGAACGCTCCAGAGCAAGTACACATGCTTCTTCATA 61989 | ||||| ||| |||| || |||||| |||||||||||||| | ||||||||| Sbjct 590 TGGTTTGAAGTCAAACGGAATTTGGCTACGCTCAAGAGCAAGTACACAAGTTTCTTCATA 531 Query 61990 AACCCCTGCCAGTTTAATAACATCAGGAAGTGCTTCAAATTTTTCACGTGAGGTCATGAC 62049 |||||| ||| ||| | ||| | || |||||| || |||||| || Sbjct 530 AACCCCAAACAGACGAATCTCTTCATCTACAGCAAAAAATTTATCTTTACTGGTCATCAC 471 Query 62050 TTCTGAATCATCCTTCATATAGAACTTATATGCAGG 62085 || | | |||| ||||| ||||| | |||||||| Sbjct 470 TTGTTCACCATCTTTCATGTAGAAAGTGTATGCAGG 435 >seq185877 Length=28917 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52801 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52860 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 13018 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 12959 Query 52861 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52918 || | ||| ||||| |||| |||||||| || ||||||||||| | || || Sbjct 12958 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 12901 Query 52919 TAACACATAACGGGGATATTGTAATTATCAACCACT 52954 ||||| | || || |||| || ||| |||||| Sbjct 12900 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 12865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543092081567120