Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq65234 170 2e-37 seq189010 93.3 5e-14 seq286911 87.8 2e-12 >seq65234 Length=1614 Score = 170 bits (188), Expect = 2e-37 Identities = 424/631 (67%), Gaps = 31/631 (5%) Strand=Plus/Plus Query 145069 AACAAATCTAAAGCTTTGATTCGTTTTTTACGAATTACTGG-AtttttttC-TAGTGATT 145126 |||||||| | || || || | |||||| | || | || ||||||||| || | | | Sbjct 482 AACAAATCAATTGCATTAATACTTTTTTTTCTTAT-ATTGCTATTTTTTTCATATTTAAT 540 Query 145127 CATAAATCTCTTTAAACTTTATTCTATCAGTAAAATACGAATTATATAATTCATTATTAT 145186 |||||| || ||||| ||| || ||| | ||| | | |||||||| | || | Sbjct 541 -ATAAATTTCCTTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGT---TAGGAA 596 Query 145187 AGACATCAGGACTAAAAAGAGTAATGTAATCGTTTTTAAT-----CAGACGTTCAATCAT 145241 | || ||||||||| ||||||||| ||||| | || | || | ||| Sbjct 597 CGTCAGAAGGACTAAA-----TAATGTAATTTTTTTTCCTAGTAGCATTCTTTGATACAT 651 Query 145242 CAAATCATTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTT 145301 || | ||| ||||| | ||||||||||||| | | || ||||||||| | ||| | Sbjct 652 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 711 Query 145302 GTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGT 145361 || ||||| | ||||| | |||||| ||| || ||||| ||||||||| | | || Sbjct 712 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 771 Query 145362 TGCCGCACCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCCAAGTGAGT-TT 145420 ||| || || || | || |||||||||||||||| ||| || | || | ||| || Sbjct 772 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTT 830 Query 145421 TCCAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAG 145480 | | || |||||| || ||||| |||| || | | || | ||| || Sbjct 831 TATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAG 890 Query 145481 CGCGATACATT---CCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAA 145537 | ||| ||| || ||||||| || || || || |||| | | |||||| | || Sbjct 891 CTCGA---ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA 947 Query 145538 -TGCTTTCGTTCACTTTG--TTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACAC 145594 ||| | ||| | | ||||| || |||| ||| ||| |||||||| |||| Sbjct 948 TTGCACTAGTT---GTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACAC 1004 Query 145595 ATGAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAA 145654 | ||||| ||||||||||||||||| | ||| |||| |||||| || || || | ||| | Sbjct 1005 AAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATA 1064 Query 145655 TTTGACGTTTTGATACAGCATTATAAAAACG 145685 ||| | | || | ||||||||||| || Sbjct 1065 TTTTAAAAGTGGAAATTGCATTATAAAAGCG 1095 >seq189010 Length=996 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 75478 TGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCT-ACCTCT 75536 || ||||||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||| || Sbjct 777 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 836 Query 75537 GAGCTAAAGGGCCTTA 75552 ||||||||||||| || Sbjct 837 GAGCTAAAGGGCCATA 852 >seq286911 Length=6367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 75473 TTTGGTGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCT-A 75531 ||||||| ||| ||| || || |||||||||||| ||| ||||||||| ||||||||| | Sbjct 5713 TTTGGTGGCCCCTGCTGGGTTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAA 5772 Query 75532 CCTCTGAGCTAAAGGGCC 75549 || ||||||||| ||||| Sbjct 5773 CCACTGAGCTAAGGGGCC 5790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541387584865360