Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq260686 131 2e-25 seq1462 125 8e-24 seq185877 82.4 8e-11 >seq260686 Length=13603 Score = 131 bits (144), Expect = 2e-25 Identities = 328/494 (66%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 142788 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAAGTTATTCAAC 142847 || || |||||||| || | ||| ||| ||| || | ||||| || |||| | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 142848 TGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 142907 || ||||| ||||||||||| | | |||||| |||||||||| |||||||||||| Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 142908 ACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCC 142967 || |||| |||| ||||||| |||||| | || || | || || || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 142968 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATA 143027 || | || || || || ||||| || || || || ||||| || || |||||||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 143028 ACACCAGTATGACGAA--CTTCACCCATACCGATTTTCGAACCTTCAGCACGAATCATAC 143085 || || || ||| ||||||| | ||| || ||||| || || Sbjct 5398 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 5341 Query 143086 CAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTGGCAGTCT 143145 | |||| ||||||||||| ||||||| | | || | | || | ||| || Sbjct 5340 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 5281 Query 143146 TATTGATTGACTTCAGGGAGTCTGCAGC-TTCGATAACCACGCAGGAACTGAACTGCCGG 143204 || || || | ||| ||| || || || || | |||||||| |||||||| || Sbjct 5280 CGTTAATGGAATCAAGGCTGTC-GCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 5222 Query 143205 GTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTCTTGTGGATACT 143264 || || || | |||| | ||| || || || |||| ||||| || ||||| | Sbjct 5221 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATC 5162 Query 143265 GCATCATAAAAACG 143278 ||||| || ||||| Sbjct 5161 GCATCGTAGAAACG 5148 >seq1462 Length=4781 Score = 125 bits (138), Expect = 8e-24 Identities = 306/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 142819 CCAGACGTTCCATCATCAAGTTATTCAACTGGACGCCATAGTCCATATGTCTGATGCGGT 142878 ||||||||| ||| | || || | || ||||| || || | || | || |||| Sbjct 1459 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 1400 Query 142879 TTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATA 142938 | ||||||| || ||| || ||||| || | || |||||| |||||| ||||| | Sbjct 1399 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 1340 Query 142939 AAGGATAATAAGCAGTAGCAGCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAG 142998 ||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 1339 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 1280 Query 142999 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGACGAACTTCACCCATACCGA 143058 |||| ||||| ||||| ||||||| ||| ||| ||||| | ||||||| || || Sbjct 1279 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 1220 Query 143059 TTTTCGAACCTTCAGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGA 143118 || ||| |||||||| ||| | ||||| ||||| || || || | ||| Sbjct 1219 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTG--TGA 1162 Query 143119 TA--TATTCGATGATTGAATTGGCAGTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTC 143176 | |||| | ||| | | | | ||| ||||| || | | | || || || Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 1102 Query 143177 GATAACCACGCAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGT 143236 ||||| |||||| || ||||| || || || || || | | || |||||||| || || Sbjct 1101 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 1042 Query 143237 GGGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACG 143278 || || |||| | || || || ||||||||||| || Sbjct 1041 AGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 1000 >seq185877 Length=28917 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 51926 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 51985 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 13018 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 12959 Query 51986 AGCCAGAAG--TCTGGCTGAACCGGGAAATAATTGACCCCGAAAATCTGTTCTTAACCCG 52043 || | ||| ||||| |||| |||||| | || ||||||||||| | ||| || Sbjct 12958 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 12901 Query 52044 TAACACATAACGGGGATATTGTAATTATCAACCACT 52079 ||||| | || || |||| || ||| |||||| Sbjct 12900 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 12865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545378523971160