Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028961.1 Length=55094 Score E Sequences producing significant alignments: (Bits) Value seq259146 82.4 3e-11 seq11972 82.4 3e-11 >seq259146 Length=2880 Score = 82.4 bits (90), Expect = 3e-11 Identities = 214/317 (68%), Gaps = 12/317 (4%) Strand=Plus/Plus Query 52161 CAGCCCTACATCGACTCACCCGAGCCACACCTGATGTACCAGTTCGTCGACCTGGCCGGC 52220 ||||| |||||||| ||||||||||| ||||| ||||||||| | |||||||| ||| Sbjct 1765 CAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGC 1824 Query 52221 GGTCGGAAACTCAACGACGTCACGAAGGTCTACGACGACGGTCACCACTTCGCGCTGACC 52280 || || || || ||| || | | ||| | |||| | | ||| |||| ||| Sbjct 1825 CCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACC 1884 Query 52281 GGTGCCCGCGGCTGCATGATCTACGTACACCG--CAGCGTCATCGAAACAGTCGGCGGCC 52338 || || ||| ||| | ||| ||||| ||||| || || | || |||||| Sbjct 1885 GGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG--ATTGAGAAGGTTGGCGGCT 1942 Query 52339 TCGACCCAGAGTTCGGCGGCTGGGGATG--GGAACAC-CCCTCCTGGTCCGACCGCATCT 52395 ||||||| | | || ||| || ||| |||||| | ||||| | | ||||| Sbjct 1943 TCGACCCGGTTTACG--GGCGCGGCATGTACGAACACTCTGACCTGGCGCTA-CGCATTC 1999 Query 52396 ACAACGCCGGCCTTACCACATTCCGGTACGGCGACGTGTGC-GGCTCCAACAAGCTCATC 52454 | |||||||| | |||| | || || ||||| ||| |||||| | ||||| || Sbjct 2000 ATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGT-TGCTGGCTCCGAAAAGCTGATT 2058 Query 52455 CACTCCATGGACGAGCA 52471 |||| ||||||| || Sbjct 2059 TACTCGCTGGACGAACA 2075 >seq11972 Length=3077 Score = 82.4 bits (90), Expect = 3e-11 Identities = 214/317 (68%), Gaps = 12/317 (4%) Strand=Plus/Plus Query 52161 CAGCCCTACATCGACTCACCCGAGCCACACCTGATGTACCAGTTCGTCGACCTGGCCGGC 52220 ||||| |||||||| ||||||||||| ||||| ||||||||| | |||||||| ||| Sbjct 1962 CAGCCTTACATCGATTCACCCGAGCCGCACCTCGCTTACCAGTTCCTTGACCTGGCTGGC 2021 Query 52221 GGTCGGAAACTCAACGACGTCACGAAGGTCTACGACGACGGTCACCACTTCGCGCTGACC 52280 || || || || ||| || | | ||| | |||| | | ||| |||| ||| Sbjct 2022 CCACGTAAGCTTAAAGACCTCGCCGTACTGTACCAGGACGATAAGCACATCGCTTACACC 2081 Query 52281 GGTGCCCGCGGCTGCATGATCTACGTACACCG--CAGCGTCATCGAAACAGTCGGCGGCC 52338 || || ||| ||| | ||| ||||| ||||| || || | || |||||| Sbjct 2082 GGACAGCGAGGCGTGATGCTTTACTACCACCGCTCAGCG--ATTGAGAAGGTTGGCGGCT 2139 Query 52339 TCGACCCAGAGTTCGGCGGCTGGGGATG--GGAACAC-CCCTCCTGGTCCGACCGCATCT 52395 ||||||| | | || ||| || ||| |||||| | ||||| | | ||||| Sbjct 2140 TCGACCCGGTTTACG--GGCGCGGCATGTACGAACACTCTGACCTGGCGCTA-CGCATTC 2196 Query 52396 ACAACGCCGGCCTTACCACATTCCGGTACGGCGACGTGTGC-GGCTCCAACAAGCTCATC 52454 | |||||||| | |||| | || || ||||| ||| |||||| | ||||| || Sbjct 2197 ATAACGCCGGGTTAACCAGCTGGGCGTTCGCTGACGT-TGCTGGCTCCGAAAAGCTGATT 2255 Query 52455 CACTCCATGGACGAGCA 52471 |||| ||||||| || Sbjct 2256 TACTCGCTGGACGAACA 2272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175134765767712