Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq110996 109 2e-19 seq165036 95.1 4e-15 >seq110996 Length=37877 Score = 109 bits (120), Expect = 2e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 7073 GAAGTCGACGTCAAAGTCGGGCATCGAAACACGTTCCGGGTTGAGGAAACGTTCGAACAG 7132 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || | | ||||| |||||||| || || ||||| || |||| || || Sbjct 7133 CAGGTCAAACTCCAGCGGGTCGAGGTCGGTAATTTTCAGTGCGTAGGCCACCAGAGAACC 7192 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || ||||| || || || || ||| |||| ||||||| ||| |||||| Sbjct 7193 GGCACCGGAACCACGTCCCGGCCCCACGGGCACGTCGTTATCCTTCGACCACTGGATGAA 7252 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGT 39743 || |||| |||||||| |||||| |||||||||||||||| || Sbjct 7253 TTCCATCACGATCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATCACGT 7302 >seq165036 Length=2215 Score = 95.1 bits (104), Expect = 4e-15 Identities = 218/321 (68%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 38374 CTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGC 38433 ||| ||||| | ||||| |||||| || ||| |||||| || |||| |||| ||||| Sbjct 1380 CTCAGCCGGATGGTGCGCCTTCAGCCACAGCGTCTGGTAGGAGACGAGTGCGTAGGCCGC 1439 Query 38434 AGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCG 38493 |||||| | |||||| ||| | || || || || | | | || || | | | | Sbjct 1440 AGAGTGTGACTTGTTAAAGCCATAACCTGCAAATTTTTCTACCAGATCGAAGATCTTC-- 1497 Query 38494 GATGG-CAGCGTCCGAGTAGCCTCGCTCGCTT---GCTCCCTTCTGGAAGTTCACGAACT 38549 || | ||| ||| || | | | ||| || || | |||| | || |||| Sbjct 1498 -ATCGACAGT-TCCCCGTCGATGCCCATACTTTCAGCACCGTCGCGGAA-TACA-GAACG 1553 Query 38550 CC--TTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 | ||||||| | ||||||| ||||| || |||||||||||||| || | || || Sbjct 1554 CTGTTTGGCCATCTCCTCGGGTTTCTTTTTACCCATGGCGCGACGCAGCATATCCGCACC 1613 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 || || ||||| |||| || | ||| || || | |||||| ||||| |||| ||| Sbjct 1614 GCCCAGCGTGTAACCGGAGAGAACCTGGGCGATCTGCATCACCTGTTCCTGATAGAGGAT 1673 Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688 || ||| ||||||| ||||| Sbjct 1674 GATGCCGTAGGTCGGTTCCAG 1694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159290057320150