Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq129892 307 2e-79 seq485876 187 5e-43 seq491645 143 6e-30 seq248802 113 1e-20 >seq129892 Length=23088 Score = 307 bits (340), Expect = 2e-79 Identities = 895/1357 (66%), Gaps = 47/1357 (3%) Strand=Plus/Minus Query 10412 CACGATCGATTTATCGCAGTTACCGCCGCCCGTGGTGGTAGAACCGCTGGACTTCGAAAC 10471 |||||| |||||| |||||||| |||| | || ||| ||||||| || || || Sbjct 1422 CACGATTGATTTAAGTCAGTTACCCGCGCCGAACATCGTCGAAGCGCTGGATTTTGAGAC 1363 Query 10472 GCTTTTCGCGCAGCGCAAGGCCGCATTTATTGCGATGTA-----------CCCGGAAGAC 10520 || || ||||||||| ||| | |||||| || ||| | || Sbjct 1362 CCTGTTGCAGCAGCGCAAAAGCGCGCTGATTGCGCGCTATCTCCCCCCCCCCCCGCCGAT 1303 Query 10521 GAGCAGGAAGAGATCGCCCGCACGCTTGAGCTTGAA-TCGGAGCCGATCACCATGCTGCT 10579 ||||||| | ||| |||||||| ||| | | || |||||||||||| || |||||| Sbjct 1302 AAGCAGGAGGCGATAGCCCGCAC-CTTAACCCTGGCGTCGGAGCCGATCGTCAAGCTGCT 1244 Query 10580 GGAAGAGAATTGCTATCGCGAATTGCTGTTGCGCCAGCGGGTGAATGAAGCGGCCCGCGC 10639 ||| ||||| ||| ||||| || | |||||||||| | || |||||||| || Sbjct 1243 GGAGGAGAACGCCTACCGCGAGGTGATCCTGCGCCAGCGCATTAACGAAGCGGCGAAAGC 1184 Query 10640 GGTGATGCTGGCTTATTCCACGGATAGCGATCTGGATAATCTGGCGGTCAATTTCAACGT 10699 ||| |||| | ||| | |||||||| || | || | |||||| | ||| Sbjct 1183 CACCATGGTGGCATTCGCCAGCGGCAGCGATCTCGACCAGCTTGGGGTCAACAACGGCGT 1124 Query 10700 TGAACGTCTGACCATTCAGGAA---GAAGACGACAGCGTTACTCCGCCAATTGAAGCCGT 10756 |||||| | | | || | ||| ||||| ||||| | || Sbjct 1123 CACCCGTCTGG---TGCTGAAACCCGCAGATAACAGCACGCTGCCGCCGACCCCGGCGCG 1067 Query 10757 GGTGGAGTCAGACGCGGATTTACGCACGCGTACCCAGCAGGCTTTTGAAGGTCTGAGCGT 10816 | | ||| |||| || || || ||| | | ||||| ||||| || |||||||| Sbjct 1066 GCTTGAGAGCGACGACGACTTCCGTCTGCGCATCGCCCAGGCCTTTGAGGGGCTGAGCGT 1007 Query 10817 GGCCGGGCCAACGGCGGCGTATGAGTTTTGGGGGCGTTCGGCTGACGGGCGCGTAGCTGA 10876 || ||||| | ||| ||||| | | | || || || || ||||| || || Sbjct 1006 AGCGGGGCCGGGCGGGGCCTATGAATATCACGCCCGCAGCGCCGATGGTCGCGTGGCGGA 947 Query 10877 TATTTCGGCGGTCAGTCCTACGCCTGCCTGCGTCACCATTTCGGTGCTGTCGCGCGAGGG 10936 | | | || |||| || | || ||| |||||| | | ||||||||||| || || Sbjct 946 TGTCACCGCCATCAGCCCGTCTCCGGCCGTGGTCACCGTCACCGTGCTGTCGCGTGAAGG 887 Query 10937 TGACGGAACGGCCAGCGATGATCTGCTTTCCGTTGTCGCTGCCGCCCTGAACGATGAAGA 10996 ||| |||||||| ||| ||||| |||| ||| || || ||||| || || || Sbjct 886 GCGCGGCGAGGCCAGCGCTGAACTGCTGGCCGTCGTCAACGCGGCGCTGAATGACGAGGA 827 Query 10997 GGTGCGCCCGGTGGCCGACAGGGTAACGGTGCAGTCTGCGGACATTGTGCCGTACCAGAT 11056 ||||||||||||||| || | || | |||||||| || | || || ||||| | Sbjct 826 GGTGCGCCCGGTGGCGGATCGCGTCAGCGTGCAGTCGGCAAAAATCGTCGAGTACCGCGT 767 Query 11057 TGATGCAACGCTTTACATCTATCCGGGGCCGGAAGCTGAACCCGTCCGGCAGGCATCGG- 11115 ||| || ||||| | ||||||| |||||||| || || || |||| || |||| Sbjct 766 TGAGGCCACGCTGTTTCTCTATCCCGGGCCGGAGGCGGAGCCGATCCGCGCCGCCTCGGC 707 Query 11116 AGCAGCAGTTACAGGCGTATATTACCGCGCAGAATCGCTTAGGGCGCGATATCCGTATTT 11175 ||| | | | ||| | | | ||||| ||| || | |||||||||||||| | | Sbjct 706 AGC-CCGGCTGGCGGCCTTTGTAACCGCCCAGTCGCGGCTGGGGCGCGATATCCGCAGGT 648 Query 11176 CTGCTATCTACGCCGCCCTGCACGTCGAAGGCGTCCAGCGCGTTGAACTGGCGCAGCCTG 11235 | || | || || || ||||||||||| || ||||||||||| || ||||||||||||| Sbjct 647 CAGCGCTGTATGCGGCGCTGCACGTCGAGGGTGTCCAGCGCGTAGAGCTGGCGCAGCCTG 588 Query 11236 TTGCGGATATCGTGCTGAGTGACTACCAGGCATCGCACTGCACCGAATACAC-CATAACG 11294 ||| ||| | |||||| | | |||||| || ||||||||| ||| | || || Sbjct 587 CTGCTGATGTGGTGCTGGATAAAACCCAGGCGGCGTACTGCACCG-CTACGCAGATCGCG 529 Query 11295 GTGGGTGGTTACGATGAGTAATGACTTGTTACCACCCAGCGC----CAGC-CGAATGGAG 11349 || || |||| |||||||| | | || | || | || | |||| ||| || | Sbjct 528 GTAGGAGGTTCCGATGAGTGACCGCCTGCTGCCCGTCGGCTCGTCACAGCTCGA--GGTG 471 Query 11350 CGCGTCGCCG-CGCGCGTCTGCGCCTCGTTGGGAGAAG-TGCCCGTGCCATTGCGCCAGT 11407 || ||||| || || |||||| | || || |||| ||||| ||||| Sbjct 470 GCCGCCGCCGAAGCCTGTGCGCGCCT-----GCAGCAGCTGCCGGTGCCGCTGCGCACCC 416 Query 11408 TGTGGAACCCGTGGACGTGTCGGGCTG-ATCTGCTGCCCTATCTGGCGTGGGCCTTCTCC 11466 ||||||||||| ||| || | |||| ||||| |||||||| || ||||||| || Sbjct 415 TGTGGAACCCGCAGACTTG-CCCGCTGCCGCTGCTCCCCTATCTCGCCTGGGCCTGGTCG 357 Query 11467 GTTGATCGCTGGGATGAGGCTTGGCC-GATCAGCACGAAACGAAAGGCGGTGGCCGATGC 11525 || |||||||||||| ||| ||||| || || || || || ||| |||| | Sbjct 356 GTGGATCGCTGGGATCAGGAGTGGCCGGAAGAG-ACCCGGCGTGCGGTGGTCGCCGCCTC 298 Query 11526 GTTCTATCTGCATAAGCACAAAGGTACTACGGGCGCCATGCGCCGGGTTGTGGAACCGTT 11585 | | | | || | ||| || || | || || |||||||| ||||| ||| | Sbjct 297 GCAGTTTATCCACCGCCGCAAGGGCACCATCTCGGCGATCCGCCGGGTGGTGGAGCCGCT 238 Query 11586 CGGCTTCTTCATCCGGGTTAACGAGTGGTGGAACATTGATACCGCACCGGGCACCTTCAC 11645 || | ||||||| ||| ||| |||||| | | | ||||||| || || |||| Sbjct 237 GGGGTATCTCATCCGTATTACCGAATGGTGGCAGAACAACGCCGCACCTGGAACTTTCAG 178 Query 11646 GCTGGATATCGGTG---TGGAAGACCAGGGCATCAGTGAAGAAACCTATCAGGAGCTTGA 11702 |||||| |||||| ||||| || ||||| | ||| || | || | ||||| || Sbjct 177 GCTGGACGTCGGTGTACTGGAA-AC--TGGCATTACTGAGGAGATGTACAACGAGCTGGA 121 Query 11703 ACGCCTGATCGCCGATGTGAAGCCGTGTAGCCGTCAT 11739 ||| |||| | ||| | ||| || ||||| ||| Sbjct 120 ACGATTGATTGGCGACGCGAAACCCGTCAGCCGCCAT 84 >seq485876 Length=560 Score = 187 bits (206), Expect = 5e-43 Identities = 353/525 (67%), Gaps = 11/525 (2%) Strand=Plus/Plus Query 11866 TACACCGGGGCGGCAATCCATTTAATTGACACCGTG-GAG--ATCGCAAGTGGCGACTAA 11922 |||| ||| || ||| | ||| | || |||| | || ||| | |||| || |||| || Sbjct 38 TACAGCGGTGCTGCACTTCATATTATCGACAACCTGAGAGTAAACGCA--TGACGACAAA 95 Query 11923 ATATTATGCCGTGCTAACCAATGTGGGCGCGGCGAAACTGGCAAATGCCACGGCATTGGG 11982 |||||| || |||| ||| | | || || || |||||||||||||||||||| ||||| Sbjct 96 ATATTACGCATTGCTCACCGAAATCGGTGCAGCAAAACTGGCAAATGCCACGGCTTTGGG 155 Query 11983 TGCGCAGGTTGAGATCACCAAGATGGCTGTAGGCGATGGTAACGGCGCATTGCCGACACC 12042 | | | || |||| || ||||||| || || || || || | ||||| ||||| Sbjct 156 TACAAAACTTCAGATTACGCAGATGGCGGTCGGTGACGGCGGGGGTACGTTGCCAACACC 215 Query 12043 AAGCCCGGCACAAACGGCGCTGGTTCATGAGCTGCGACGCGCACCGCTCAATAGCCTGAG 12102 || | ||||| |||||| || || ||| ||||||||||| ||| ||||| Sbjct 216 CGGCGCTAAGCAAACTGCGCTGATTGGGGAAAAGCGCCGCGCACCGCTTAATTCACTGAG 275 Query 12103 CATTGACCCGAATAACGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG 12162 | |||| ||| ||| || ||| Sbjct 276 CGTTGATCCGGTCAACAGCAGCCAGATCGTTGCCGAGCAGATTATCCCGGAAAGTGAGGG 335 Query 12163 CGGGTGGTGGATTCGTGAAATTGGTCTGTTTGA---TAAAGACGGCGATATGATTGCCGT 12219 || | ||||| ||||| || || |||||||| | | ||| || || |||||||| Sbjct 336 AGGCTATTGGATCCGTGAGATCGGCCTGTTTGACGCTGATAACG-CGTTA--ATTGCCGT 392 Query 12220 CGCCAACTGTGCGGAAACCTATAAGCCGCAGTTACAGGAGGGAAGCGGGCGCGTGCAGGT 12279 || |||||||||||||||||||| |||||| | |||||||| || || ||| ||| Sbjct 393 GGCAAACTGTGCGGAAACCTATAAACCGCAGCTGCAGGAGGGCAGTGGCCGCACCCAGAC 452 Query 12280 GGTGCGCATGATTCTGATTGTCAGCAGTACTGCCGCCGTGACGCTGAAAATTGACCCTTC 12339 || || ||||| |||||||||| ||||| | || ||||| | ||||| ||||| || Sbjct 453 AGTACGTATGATCTTGATTGTCAGTAGTACCGAGGCTGTGACTTTAAAAATCGACCCATC 512 Query 12340 GGTAGTGCTGGCAACCCGTCAGTACGTTGATAATAAAATTATTGA 12384 |||||| || || || ||| | ||||| ||| |||| | ||||| Sbjct 513 GGTAGTACTTGCCACGCGTAAATACGTCGATGATAAGGTGATTGA 557 >seq491645 Length=775 Score = 143 bits (158), Expect = 6e-30 Identities = 438/667 (66%), Gaps = 25/667 (4%) Strand=Plus/Plus Query 29654 CCGCGCGAGACGCAGCAATATCTTTGCAAAGTCTGGGCGAGAACCCGCGCAGCGTGGAAG 29713 ||||| |||||||| | |||||||| || || ||| | | || ||||||||| | Sbjct 71 CCGCGAGAGACGCAAAAGTATCTTTGTAAGGTGTGGACAAAAATTCGCGCAGCGCTCTCG 130 Query 29714 AGAAAAGGGATCCGCGTCTTTGGTTTCCGCGTGGTCGAACCGCACCACGATGCCACGCCA 29773 | ||| ||||| | | ||||| ||||| ||||| ||||| ||||| || | || || Sbjct 131 CGTGAAGAGATCCACCTGTTTGGCTTCCGTGTGGTTGAACCTCACCATGACGGGACACCG 190 Query 29774 CACTGGCATTTACTTCTTTTTATGCGCCCGGAATGCGTCGAGCAGGCGCGC--GAAATCT 29831 |||||||| | | |||| |||| |||||| | ||| |||| |||||| Sbjct 191 CACTGGCACATGTTGTTTTTCATGCTGCCGGAACACAA--AGCCCGCGCCACTGAAATCA 248 Query 29832 TCCGTAAATATGCCCTGAAAGAAGACGGCAACGAACCGGGTGCGCAGGA-------AAA- 29883 | |||||||||| | ||||||| |||| | | ||| | | ||| Sbjct 249 TGGCGAAATATGCCCGTGAGGAAGACGCAGACGAGCTGAACACGCCGCAGGCTATGAAAG 308 Query 29884 -CCGCTTTCAGGTTGTGCCGATCGACGATGCCCACGGCAGCGCAACCGGCTACATAGCGA 29942 ||| || || | || ||||| || | |||||||| || |||||||| || | Sbjct 309 CCCGTTTCCATGCTGAAGATATCGATCCGGCTAAAGGCAGCGCCACGGGCTACATCGCCA 368 Query 29943 AATACATTTCGAAGAATATCGACGGCTTCGCGCTGGATGGTGAGACAGACGACGAAACCG 30002 | ||||| || || || |||||||| | || ||| ||| ||||| ||||| ||| || | Sbjct 369 AGTACATATCAAAAAACATCGACGGTTACGAGCTTGATAATGAGAAAGACGGCGAGACGG 428 Query 30003 --GGGAAGACCTGAAAGAAATGTCACTTCGCGTTAGC-GCGTGGGCATCGCGCTGGGCTA 30059 || || || || |||||| | | ||| | | |||||| | ||||| ||| || Sbjct 429 ACGGCAACGCCAGA--GAAATGGC-CAAGGCGGTCTCCGCGTGGTCTTCGCGTTGGCGTA 485 Query 30060 TTCGCCAGTTTCAGCAGATCGGCGGTGCGCCGGTCACGGTATATCGCGAACTTCGCCGCC 30119 | || |||||||||||||| || || || || ||||| || | || || || ||| | Sbjct 486 TACGTCAGTTTCAGCAGATTGGTGGCGCACCCGTCACCGTGTGGCGTGAGCTGCGCAGGA 545 Query 30120 TGGGCGATCGCGAACTGGTGTTACACCCTGAACTGGAAACCGCCCGGCAGGCCGCTAAC- 30178 || ||| | |||| | ||| || |||| | | | | |||| || Sbjct 546 TGCGCGGGCAGACGCTGG-ACGATCCCCGGA--TGGATGCTGTGCTGGCTTCCGCAGACG 602 Query 30179 --GGTGGCGAATGGGATAACTACGTATTAGCCCAGGGTGGCCCATTGGTTGAGCGCGATA 30236 | || || |||| ||| || ||||| |||||| |||||| ||| || Sbjct 603 TTGCTGTGGACTGGGCAGCATACACCCAGGCGCAGGGCGGCCCACTGGTTGCGCGTGACG 662 Query 30237 AGCTGCGCATCCGTCTGAATTATGAAACCACTGAGAACGGCAACGCCTACGGCGATAACG 30296 | ||| || || ||| |||||||| || ||| |||||||| |||||||| ||| Sbjct 663 ATCTGGTTATTCGCCTGGCTTATGAAATTACGGAGTGCGGCAACGAATACGGCGAAGACG 722 Query 30297 TCCAGCG 30303 ||||||| Sbjct 723 TCCAGCG 729 >seq248802 Length=12257 Score = 113 bits (124), Expect = 1e-20 Identities = 609/954 (64%), Gaps = 61/954 (6%) Strand=Plus/Minus Query 19474 AACATATTGAAATATTTGAGTTTCTTAGGCAGTGCCATAAGCGCCCCCGGTTAGTTGTTC 19533 |||| ||| | ||||| |||||||||||||||||||| || | | |||| ||||| Sbjct 3291 AACAAATTCAGGTATTTCAGTTTCTTAGGCAGTGCCATGAGGGTTTCTCCTTAGCTGTTC 3232 Query 19534 ACTGCGCTGGAAAACGTAGCGAAGTAGGTATCAGTAAACGTCTGGATCAGGCTGAGATTT 19593 || | || || | || | |||| | || |||| ||| |||| | |||| | Sbjct 3231 ACAGAAGCGGCGAAGTTCGCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCT 3172 Query 19594 TCCAGCGGTGGAACCGGCGTATAGTCGTAATTAATGGTCAG-TTGAC--CATTGCGCAGG 19650 |||||||| || ||||| ||||||||||| | || ||| ||| | | || |||| Sbjct 3171 TCCAGCGGCGGCACCGGGGTATAGTCGTAGTCGATATACAGCTTGCCGGCTTT---CAGG 3115 Query 19651 TTTTCCGTGGTGTT--CGGTTCAGGGTCGTACCAGCAGCGGGCGCCCAGCAGTTTGCCTT 19708 | ||| | |||| || || ||||||||||||| |||||||||||| | || Sbjct 3114 CTCTCCTGGCTGTTGGCGCTT--TCGTCGTACCAGCAGTTGGCGCCCAGCAGATAACC-G 3058 Query 19709 CCGTCACATAAGCGGTC--AGCTTCTTGTTGATGCCGTCCACGATGTCCTTAACCAGCGA 19766 ||| || ||| | | ||| |||||| ||| | | ||||| ||||||| Sbjct 3057 GCGT-TGATCAGCTCACGGAACTTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGT 2999 Query 19767 CGGGGTAAGCGGTTTATCAACATAGTAGAAGTGGGCTTCAGCGACGGTATCAGCAACGAT 19826 ||| || ||||| || || | | || || || || | ||| || || | | Sbjct 2998 CGGCGTCAGCGGCTTGTCGTTGGCCCACATATGCGCATCGGCCATGGTGTCGGCGATCAC 2939 Query 19827 CTGCGCGGTTCGGGTATAACTTTCGAAGATGTA---CGTTTCCTTGTCGCAGGTACGCGA 19883 |||||| | ||||| | |||| ||| | | || || | | ||||| || Sbjct 2938 CTGCGCCGAGCGGGTGAAGTTTTCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTT 2879 Query 19884 TCCCCAGATGCGGTAGCCGTCCTGCTTGATCAGCGTGGTAACGCCTGCCGCATTCAGTTC 19943 ||||||| |||| | ||||| | |||||||||||| |||| || ||||||| Sbjct 2878 GCCCCAGAAGCGGAAACCGTCTTTGCGGATCAGCGTGGTGACGCTGGCTTCATTCAG--- 2822 Query 19944 GTCAGCGTCGGTATCGGTGC---CCTGCAACGTGAAATAGATGTCCCGATCC----ATCC 19996 ||| |||| |||||| | ||||| | | ||| | |||| | | | Sbjct 2821 --CAG-ATCGGCATCGGTCCCCACCTGCTGCAGGTCCCAGA-ATACCGAGGCGGAAACGC 2766 Query 19997 CAAGCACGTTATTAACGGGCACGTTGGAAATGGTTTTATGCCAGCC-CTG-CGTTGCGTC 20054 | |||| || ||| ||||| || | ||||||||||||||| ||| |||| || Sbjct 2765 CGGTCACGCCGTTGACGCCGACGTTCGACAGGGTTTTATGCCAGCCGCTGTCGTT--ATC 2708 Query 20055 GATTCTGGCGCGCATCCCAACAGCATGAGCGCCTACGGGCACGGTGGCATTGG------C 20108 |||| ||||||||| || ||| || |||| ||||||||| || | Sbjct 2707 GATTTTGGCGCGCAGGCC--------GAGGGC--GCGGG--CGGTGGCATAGGCAGTTTC 2660 Query 20109 CCCAGCGTT------GGTGTCGTAGCAGATGAAATTAGGCCAGATGACCATCATTTCACG 20162 | | ||| | ||||| || || || | |||||||| ||||||| || || Sbjct 2659 CGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCGGGCCAGATCACCATCAGCTCGCG 2600 Query 20163 CTGTGCAAACTGTTCGCGGTAGGTCTTCGCTTCGGCAATCGTATTGCAGCCGTTCGCGGC 20222 ||| || | |||||| || | ||| ||| | ||| || ||||||| || | Sbjct 2599 CTGGCTGAAGTTTTCGCGATACTTGAGCGCATCGCTTACCGTTTTACAGCCGTAAGCCGA 2540 Query 20223 TACATATGCGAACGCGCGCAGTTTTTCCGCA-ATGACACCGAGTTGTGCGGCTACTGCTT 20281 | ||| |||| |||||||| | | ||| || | | || | ||| ||| | Sbjct 2539 GATATAGCCGAAGGCGCGCAGCTGCT-GGCAGATTGCCGCCAGCGCGGTGGCCACTTCCA 2481 Query 20282 TCGTATCAAGTCCGGGAACAGCCAGGACGCGCGGGCGTACGCCTACGCGCATTTCGGCAG 20341 || ||| || || || || | || | ||||| ||||| | | | | || | Sbjct 2480 GCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCTTAACGCCAAGGTCGGTCTGCGCCG 2421 Query 20342 ACAGCAGCGCGTACATGCCGGTAAAGCGCCCGTTTGCATCGGTGCCGCCAATGA 20395 |||||||| | ||| ||||| |||| ||||| |||||| ||||||| |||| Sbjct 2420 CGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAGCATCGCTGCCGCCGATGA 2367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106472241808542