Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_029065.1 Length=98765 Score E Sequences producing significant alignments: (Bits) Value seq161181 165 5e-36 seq176708 95.1 8e-15 >seq161181 Length=1368 Score = 165 bits (182), Expect = 5e-36 Identities = 308/451 (68%), Gaps = 21/451 (5%) Strand=Plus/Minus Query 14322 ATGGTTTCAGAAGTTGTTTGAGACTGTTGAAGTTCTCAATGTAGTCATTCTCGCCTTGTT 14381 ||||||| || | |||| || ||||| | ||||| |||||||| || || | Sbjct 765 ATGGTTTTAGCAAATGTTGATTACGTTTGAATCTTTCAATATAGTCATTTTCTCCCATTC 706 Query 14382 CTTCGTACAGGTCAAGCACTTTTTGATAATTTTCCCAAGCATATTCACGGAACCAACCGC 14441 || |||| |||||||||||| | |||||| | |||||||||||||||||||||||| | Sbjct 705 GCTCATACAAGTCAAGCACTTTGTCATAATTGTTCCAAGCATATTCACGGAACCAACCAC 646 Query 14442 TAGTGATGCTTGTGCACACCTTCATCAGAGCCATTTCAAAGCTCCAACGGGCCGATGGGC 14501 | |||||||| || || || ||||||| || | |||||| || |||| || | ||| Sbjct 645 TTGTGATGCTAGTACAAACTTTCATCAAGGCAAGTTCAAAACTATAACGTGCAGCTGG-- 588 Query 14502 CACCTTCCTTGCCCAAGCCATGAGGAATCTGCGAACGCTCCAGCGCGAGCACACAGGACT 14561 ||| ||| || ||||| || |||||| || || || ||||| | | Sbjct 587 -------TTTG---AAGTCAAACGGAATTTGGCTACGCTCAAGAGCAAGTACACAAGTTT 538 Query 14562 CTTCATAGACACCGTACAGACGGATACGCTCTTCA---ACACTGAAGAACTTCTCCTTGG 14618 ||||||| || || ||||||| || ||||||| ||| || || || || || Sbjct 537 CTTCATAAACCCCAAACAGACGAAT---CTCTTCATCTACAGCAAAAAATTTATCTTTAC 481 Query 14619 AAGTCATCACCTCAGAGCCGTCTTTCATGTAGAAAGTGTAGGCAGGTCGAGGCCATTCAG 14678 |||||||| | || |||||||||||||||||||| ||||| || | | || Sbjct 480 TGGTCATCACTTGTTCACCATCTTTCATGTAGAAAGTGTATGCAGGATGACGGCTACCAA 421 Query 14679 TGTCACCGTTGTCACTCCACAACAGAGCCTGAGTTTCATGGATGCTGTCGTGGTCATAGA 14738 | | | | | | || | || || ||| ||| || | || || ||||||| Sbjct 420 TATAATCAATTCCGCT---AATCAATGCAACAGTCAGATGAATAGTATCATGATCATAGA 364 Query 14739 TGTAGTTCACACCATCGCCAGTGAAGAACTC 14769 ||||||| |||||||| ||| ||||| || Sbjct 363 TGTAGTTTACACCATCACCATCAAAGAATTC 333 >seq176708 Length=793 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 85241 ACTGATGGTTACAAACTGGGTCACGGCCCGATGTACCGCAAA-GGCAC--CACTGTTGTA 85297 ||||||||||| || | |||||||| | ||||| ||| | ||||| |||| | || Sbjct 58 ACTGATGGTTATAAGATTGGTCACGGTGCAATGTAT-GCAGATGGCACAGCACTTATTTA 116 Query 85298 GGCTCTAACCTGACCCCACGCACTGACAAGATTCACCGCCGTAACTGCACTGCATTTTAC 85357 || || || || || ||||||||||| ||| | ||||| || ||||| | ||||| Sbjct 117 T--TCGAATCTAACGCCCCGCACTGACAAAATTTATCGCCGCAATTGCACCGAGTTTTAT 174 Query 85358 GATGGCAAGCTGGTTTGGGTTGGTGGTCAAGCTGCTGTACAAGAACTGAACGAAAACTGG 85417 |||||||| ||||| | ||||| | |||| |||| | |||||| | | |||| ||| Sbjct 175 GATGGCAAACTGGTGTTTGTTGGCGTACAAGGTGCTATTCAAGAAATTCAAGAAACTTGG 234 Query 85418 GTTC 85421 | || Sbjct 235 GATC 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314001042394606