Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq150516 971 0.0 seq20418 84.2 7e-12 >seq150516 Length=8092 Score = 971 bits (1076), Expect = 0.0 Identities = 1073/1417 (76%), Gaps = 13/1417 (1%) Strand=Plus/Minus Query 23867 ATGAAACCCGAGCACCTTGCGAAGCTCCGGGACAAGCTGTGGCGCCTGAACAACCTGTAT 23926 |||||||| |||||||| | ||| ||||| ||||||||||| || || || Sbjct 2134 ATGAAACCTGAGCACCTCAAGTTGCTGGCAGACAAAGACTGGCGCCTGAATAATCTCTAC 2075 Query 23927 TTCATCACCGACAAGGCAGGCAAGAAGACTCGCTTCCGCATGACAGCGGAGCAGTTGGAG 23986 | || ||||| || | ||| ||| || |||||| | ||||| | |||||| || Sbjct 2074 TGGATTACCGATAAAGAAGGAAAGCCAACACGCTTCAGGATGACTCCTGAGCAGCGCGAA 2015 Query 23987 TATTTCGAAGGCCTGCACACTCGGAACATCATCCTGAAGGCACGCCAGCTCGGCTTTACG 24046 || |||||||| | ||||| || |||||||||||||| ||||||||||| || |||||| Sbjct 2014 TACTTCGAAGGAATCCACACCCGCAACATCATCCTGAAAGCACGCCAGCTTGGTTTTACG 1955 Query 24047 ACTGAGCAGTGCATCATTCAACTGGACGCGGCGCTGTTCGAGTCGGCCAAGTGCGCGCTG 24106 |||||| |||||| || || ||||| |||||| |||||||||| || ||||| |||||| Sbjct 1954 ACTGAGGTGTGCATTATCCAGCTGGATGCGGCGTTGTTCGAGTCTGCGAAGTGTGCGCTG 1895 Query 24107 ATTGCTCACACCCTGAATGATGCCAAGCGCCTGTTCCGGGAGAAGATCAAGTTCGCGTAC 24166 || || ||||| || || || |||||||| |||||||| |||||| | || ||||| ||| Sbjct 1894 ATCGCCCACACACTTAACGACGCCAAGCGGCTGTTCCGTGAGAAGGTGAAATTCGCCTAC 1835 Query 24167 GACAATCTGCCGGCAGAGATCAAGGCGGCCAACCCGGCGCGCAACGACGCAGCCGGTGAG 24226 ||||||||||| | |||||| |||||||| |||||||| | || ||| | || || ||| Sbjct 1834 GACAATCTGCCTGAAGAGATTAAGGCGGCTAACCCGGCCAGTAATGACTCTGCAGGGGAG 1775 Query 24227 CTGGTATTCGCCAAGGGCGGCTCGCTGTATGTCAGCACGTCATTTCGTGGCGGCACGCTG 24286 ||||||| |||||||| ||||| || |||||||| ||||||||||||||||||||| Sbjct 1774 TTGGTATTTAAGAAGGGCGGGTCGCTTTACGTCAGCACCTCATTTCGTGGCGGCACGCTG 1715 Query 24287 CGTTACCTGCACGTCTCCGAGTTCGGAAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGC 24346 || ||||||||||| |||||||| || ||||| |||||||||| ||| | ||||| || Sbjct 1714 CGCTACCTGCACGTTTCCGAGTTTGGGAAGATATGCGCCAAGTATCCAGATAAGGCCCGT 1655 Query 24347 GAGATCGTCACTGGTGCGTTTGAGGCGGTGGCTACTGACTGCTTCGTCACCATCGAATCG 24406 ||||| |||||||||||||||||||| || | || | ||||| | || ||||| Sbjct 1654 GAGATTGTCACTGGTGCGTTTGAGGCAGTATCAACCGGATGCTTTGCGACTATCGAGAGC 1595 Query 24407 ACGGCAGAGGGGCGGGCAGGGTACTTCTTCGATTACTCGCAGGCCGCTGAGAA-GCAACA 24465 |||||||||||||| || || |||||||||||||| | ||| | ||||| || || || Sbjct 1594 ACGGCAGAGGGGCGAGCGGGTTACTTCTTCGATTATTGCCAGACAGCTGAAAAGGCCTCA 1535 Query 24466 GGCCGCAAAGC-AGCCGCTCGGCAAGCTGGACTGGAAGTTCTTCTTCTTCAGCTGGTGGA 24524 ||| || |||| || | ||||||||||||||||||||||||| ||||||| Sbjct 1534 --TTGCAGGGCAAGCCCCTTTCCCCGCTGGACTGGAAGTTCTTCTTCTTCTCTTGGTGGA 1477 Query 24525 AGAATGCCGAGTACTGGCTGGACCCGGCCGGAACGCTCCTGCCGCAGCGCCTGACAGATT 24584 ||||| | ||||| | ||||||| | | | | |||||||||||| |||| Sbjct 1476 AGAATCCGCAGTACGCAATCGACCCGGTAGAAGC---ATTACCGCAGCGCCTGGTTGATT 1420 Query 24585 ATTTCGCCGAGCTTGAGGCAAAGCACGGCATCAAGACT-AACGAAGGTCAGCGCGCCTGG 24643 | |||| ||| | || || ||||||||| | || || ||||| | ||| ||||| Sbjct 1419 ACTTCGATGAGATGGAAGCCAAGCACGGCGT-AATTCTCAACGAGCGCCAGAAATCCTGG 1361 Query 24644 TACGCCGCCAAGGAAAAGACCCTCGGCGACGACATGAAGCGGGAATACCCGTCGATCCCT 24703 ||| |||||| || || || |||||||| ||||||||||| || || ||| |||| ||| Sbjct 1360 TACTACGCCAAAGAGAAAACGCTCGGCGATGACATGAAGCGTGAGTATCCGACGATGCCT 1301 Query 24704 GCCGAGGCATTCCAGCAGAGCA-TCGAGGGCGCCTACTACGCCAAGCAATTCGCCAAGCT 24762 || |||||||||||||| | || |||| ||||| |||||||||||||| ||| | ||| Sbjct 1300 GCTGAGGCATTCCAGCA-ATCAGTCGAAGGCGCTTACTACGCCAAGCAGTTCCGCTGGCT 1242 Query 24763 GTACGCACAGCAGCGAATCGGCGTGCTGCCAGATAACAGTCACCAGCCGGTGCACACCTT 24822 ||| | | | || || ||| |||||| |||||| |||| |||||| ||||| || Sbjct 1241 CTACACCAACAAACGCATTGGCACGCTGCCTGATAACTCACACCTGCCGGTTCACACGTT 1182 Query 24823 CTGGGACATCGGCGTGGGCGACTCAACGGCGATCTGGTTCGTTCGGATCGTTGGCGATGA 24882 |||||| || |||||||| ||||||||||| ||||||||||| || || ||||| || Sbjct 1181 CTGGGATATAGGCGTGGGTGACTCAACGGCCATCTGGTTCGTGCGTGAAGTGGGCGAAGA 1122 Query 24883 GTTCCACGTCGTCGACTACTACGAGAACAGCGGCGAAGGCCTGCGGCACTACATGAAGGT 24942 |||||| || ||||||| ||||| ||| || ||||||||||| |||||||||||||| Sbjct 1121 ATTCCACATCATCGACTATTACGAAAACTCAGGTGAAGGCCTGCGTCACTACATGAAGGT 1062 Query 24943 GCTTAAGGAGCGCGGCTACACGTACGGCGACCACTGGGGGCCGCACGACATCGACAACCG 25002 ||| || || || ||||| |||||| || |||||||||||||| |||||||| ||||| Sbjct 1061 GCTGAAAGACCGAGGCTATGAGTACGGTGAGCACTGGGGGCCGCATGACATCGAAAACCG 1002 Query 25003 CGAGTTCGGTAGCGACGGCAAGACCCGCCGCGAGATCGCAAAGGAAGGCTACGAGTTCGA 25062 ||||||||| |||| ||| ||||| ||| | || ||||| ||||| |||| Sbjct 1001 AGAGTTCGGTTCTGACGCCAAATCCCGCAAAGAGCTGGCGCGCGAAGGGTACGAAATCGA 942 Query 25063 CGGCCAGCGCTACAGCATCCGCTTCCAGGTGGTGCCGAAGCTGGGCGTAGACGATGGCAT 25122 ||| ||| ||| ||| ||| |||| ||||| || || || || ||| || Sbjct 941 CGGTCAGACTTACTCCATGACATTCAAGGTTGTGCCAAAAACTGGAGTTGATACTGGTAT 882 Query 25123 TGATCACGTACGCGAGATCCTTCCCCGCTGCGCCTTCGATGACTCGAAGTGTG-AGACGG 25181 ||| ||| || || || || || || | ||||| || |||||| | ||| | Sbjct 881 TGAGTCCGTGCGTGAAATTCTGCCTAAGTGTGTTTTCGACGAAGAGAAGTGCGCAGA-AG 823 Query 25182 GCATTGCCTGCCTCGAAAACTACCGCAAGGAATGGGACGACAAGCGCGGCTGCTGGAAAG 25241 | ||| || ||| || ||| || || || |||||||| ||||||||||||||||||| Sbjct 822 GTATTACCCACCTTGAGGGCTATCGTAAAGAGTGGGACGAAAAGCGCGGCTGCTGGAAAG 763 Query 25242 ACAAGCCGCTTCACGACTGGTCGTCTCACGGCTCCGA 25278 ||||||| |||||||| | || ||||||||||| Sbjct 762 ACAAGCCACTTCACGATCATACATCACACGGCTCCGA 726 >seq20418 Length=11049 Score = 84.2 bits (92), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 4/77 (5%) Strand=Plus/Minus Query 9859 TCCAGCGCCTCCAGCAGATCAGGCGCGGCCGCTATCAGGCGGGCGTTGGCTTCCTGAATG 9918 |||||||||||||||| ||| ||||||||||| |||||||||||||||||||| || | Sbjct 3477 TCCAGCGCCTCCAGCAAATCCGGCGCGGCCGCGATCAGGCGGGCGTTGGCTTC--GACCG 3420 Query 9919 G--ACACCATCTCGCCG 9933 | || | ||||||||| Sbjct 3419 GGAACCCAATCTCGCCG 3403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154687107486056