Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq32733 149 3e-31 seq228004 125 3e-24 seq430283 87.8 9e-13 >seq32733 Length=979 Score = 149 bits (164), Expect = 3e-31 Identities = 213/296 (72%), Gaps = 13/296 (4%) Strand=Plus/Minus Query 66429 GCCGAGCTCGAAGGCGACATCGGGGAC-AG-TCACGTCGGCCTGCACGCGCGCCTCATGT 66486 ||||| |||||||||| || || ||| || | || |||||||| || ||||| ||| Sbjct 291 GCCGAAATCGAAGGCGAAATGGGTGACCAGCTGCCG--GGCCTGCAGGCCCGCCTGATGA 234 Query 66487 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 66546 |||||| |||||||||| ||||||| |||| || ||||||| ||| | ||| Sbjct 233 GCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCTGGTGGTCTTCA 174 Query 66547 TCAACCAGTTGCGCGAGAAGATCGGCAACGTG------GGCTACGGCCCGAACGAGACCA 66600 |||||||| ||||| |||||||||| || ||| | ||||| | | ||||| Sbjct 173 TCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCA 114 Query 66601 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66660 || |||||||| || ||| |||||||||||| || ||| |||| ||||||| |||| Sbjct 113 CC---GGCGGCAACGCACTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTATCG 57 Query 66661 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTC 66716 | | ||| | ||||| ||| ||||||||| ||| | | ||||||||| Sbjct 56 GCGCGATCAAGAAGGGCGACGAGATCATCGGCAACCAGACCAAGATCAAGGTCGTC 1 >seq228004 Length=3045 Score = 125 bits (138), Expect = 3e-24 Identities = 473/729 (65%), Gaps = 20/729 (3%) Strand=Plus/Plus Query 66146 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 66205 |||||| | || || |||||||| || || |||||||| || | || ||| ||| || Sbjct 313 GGGCCGTATCGTTGAGATCTACGGACCTGAGTCTTCAGGTAAAACCACGCTGACTCTGCA 372 Query 66206 CGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTC 66265 | | || ||| ||| ||| | | ||||| ||||| || ||||| | Sbjct 373 GGTTATCGCATCTGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCCGAGCATGC 432 Query 66266 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT-TC 66324 || || || | ||||||||| ||||| || ||| | || ||||| | || | || Sbjct 433 GCTTGATCCGGTTTACGCCAAGAAACTCGGCGTAGACATTGATAACCTGCTC-TGCTCTC 491 Query 66325 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66384 |||| |||||||| |||||||| ||||| ||| ||| || | ||||| | Sbjct 492 AGCCAGACACTGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGGCGCGCTCTGGTGCCG 551 Query 66385 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 66444 | | | || |||| ||||| || ||||| ||| ||| || || ||||||| | Sbjct 552 TTGACGTGATCATCGTCGACTCCGTCGCGGCGCTGACGCCTAAAGCGGAAATCGAAGGTG 611 Query 66445 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 66504 | ||||| ||| ||| | ||||| || || | ||| ||||| ||||| || | Sbjct 612 AAATCGGTGACTCACACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAAC 671 Query 66505 TCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 66562 | |||| | | || |||| |||| || ||| | | | |||||||| | || Sbjct 672 TGGCCGGTAAC--CTGAAGCAGTCCAATACCCTGCTGATTTTCATCAACCAGATCCGTAT 729 Query 66563 GAAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 66620 ||| || || | || | || |||| || |||||||| || || || || || Sbjct 730 GAAAATTGGTGTGATGTTTGGTAA--CCCG---GAAACCACCACTGGTGGTAACGCGCTG 784 Query 66621 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 66680 | |||||||||||| ||||| | ||| |||| || |||| | || || |||||| Sbjct 785 AAGTTCTACGCCTCTGTCCGTCTTGATATCCGCCGTATCGGTGCAATCAAAGAGGGCGAT 844 Query 66681 GAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 66740 | | ||||||| ||||| || || || || || ||||| | ||| |||| | Sbjct 845 AACGTGGTCGGCAGTGAGACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCATTC 904 Query 66741 CGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC-TCGCGTGAGGTCGAACTCCT 66799 | || |||||| || ||||||| || || ||| | | ||| || || | Sbjct 905 AAACAGGCTGAGTTCCAGATCATGTACGGCGAAGGTATCAATACCTTTGGT-GAGCTGGT 963 Query 66800 CGACCTGGCCGTGTCGCAGGGCCTG-GTGAAGAAGTCGGGCGCCTGGTTCAAGTAC---G 66855 |||||||| |||| ||| ||| |||| ||| |||| || |||| || ||| | Sbjct 964 CGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAG-CGGGTGCATGGTACAGCTACAATG 1022 Query 66856 GGGACAAGA 66864 | ||||||| Sbjct 1023 GCGACAAGA 1031 >seq430283 Length=268 Score = 87.8 bits (96), Expect = 9e-13 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 66221 CCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTA 66280 |||||||||||| |||| ||| || | |||||| || |||||| | || ||||| | ||| Sbjct 15 CCAGAAGGCCGGCGGCACCGCGGCGTTCATCGATGCCGAGCACGCGCTCGACCCGGTGTA 74 Query 66281 ---CGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGG 66337 ||||| |||||| || || |||| | || || | |||||||| || || Sbjct 75 TGCGGCCAA---GCTCGGCGTCAACGTCGAGGATCTGCTGCTCAGCCAGCCGGATACCGG 131 Query 66338 CGAGCAGGCCCTGGAGATCGTTGACCTCCTCGT 66370 ||||||||| |||||||||| ||| | || || Sbjct 132 CGAGCAGGCGCTGGAGATCGCCGACATGCTGGT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239493937689300