Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq79071 197 1e-45 seq222524 174 2e-38 seq1462 167 3e-36 seq65234 147 2e-30 seq209331 116 4e-21 seq260686 96.9 4e-15 seq213894 93.3 5e-14 >seq79071 Length=852 Score = 197 bits (218), Expect = 1e-45 Identities = 148/174 (85%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 123123 CAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCCA 123182 || ||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 354 CAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAGTTAAACATCCT 295 Query 123183 GAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCTG 123242 ||||| |||||||||||||| |||||||| || || ||||| || || |||||||| ||| Sbjct 294 GAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTTTTAACTCACTG 235 Query 123243 ACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAA 123296 || || || |||||||||||||| || | || ||||||||||| ||||| ||| Sbjct 234 ACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGTCTTTAA 181 >seq222524 Length=8439 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| ||||||||||| ||||| ||| | |||||||| || ||||| || || ||||| | Sbjct 4200 GTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAGCACC 4141 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | || |||||||||||||||||||| || || || |||||||| || || ||||||||| Sbjct 4140 CGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAACTCTT 4081 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAA 123296 |||| || ||||||||||| ||||| || | || ||||||||||| || || ||| Sbjct 4080 TGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 4025 >seq1462 Length=4781 Score = 167 bits (184), Expect = 3e-36 Identities = 318/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 41872 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCAACCCCAATTATGGCAGG 41931 ||| |||||||||||||| || || | || |||| || || || ||||| ||||| || Sbjct 999 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 1058 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | || || ||||||||||| ||| || || |||| || || ||| || Sbjct 1059 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 1118 Query 41992 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 42051 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 1119 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 1178 Query 42052 CGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCG 42111 ||||||||| | ||| ||||||| ||| ||| || ||||||| | Sbjct 1179 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 1238 Query 42112 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 42171 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 1239 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 1298 Query 42172 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 42231 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 1299 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 1358 Query 42232 GAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGA 42291 | | ||||||| |||||||||||| || || || | |||||| | || || | || Sbjct 1359 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 1418 Query 42292 CTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAA 42338 ||||| | || || || | || ||| |||| | |||||||| Sbjct 1419 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 1464 >seq65234 Length=1614 Score = 147 bits (162), Expect = 2e-30 Identities = 289/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 41855 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCA 41914 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 1113 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 1054 Query 41915 ACCCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATT 41974 || || |||||| |||| | | || || ||||| || || | |||||| | ||| Sbjct 1053 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 994 Query 41975 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 42031 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 993 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 937 Query 42032 ATTTCTAAACGAGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 42088 ||||| ||||||| || || || || |||| |||| |||| || || | || || Sbjct 936 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 877 Query 42089 AAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 42148 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 876 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 820 Query 42149 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 42208 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 819 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 760 Query 42209 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 42268 || || ||||| ||||| | || || |||||||| | |||||||| | ||| | || Sbjct 759 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 700 Query 42269 GAAAA 42273 ||||| Sbjct 699 GAAAA 695 >seq209331 Length=9407 Score = 116 bits (128), Expect = 4e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || || |||||||||||| || ||||||| || || || | | |||| Sbjct 478 GTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCGATGGAACATC 419 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 |||| |||||||||||||||||||| || || || ||||| || || ||||||||||| | Sbjct 418 CAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTTAACTCAC 359 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACT 123284 ||||| |||||||||| || || || | || ||||| ||| Sbjct 358 TGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCACT 315 >seq260686 Length=13603 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCAACCCCAATTATGGCAGG 41931 ||||| || ||||| | || || | | ||| |||| |||| || ||||||||| | || Sbjct 5148 CGTTTCTACGATGCGATCTCCAC-CTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGG 5206 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | || || ||||| ||||||||| || ||| | ||||| ||| || | Sbjct 5207 CGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCT 5266 Query 41992 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 42050 | || |||||| || || ||| | ||| | | || ||||| | || || |||| Sbjct 5267 TGATTCCATTAACGCCACCTCCAGCG-CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTA 5325 Query 42051 TCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 42108 |||| || |||| ||| | ||||| || |||| | ||||||| | Sbjct 5326 TCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCAT 5385 Query 42109 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 42168 || ||| ||| || ||||| |||| || || ||||| || || || || || || || Sbjct 5386 TCCACAC-CGGCTGC-ATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTC 5443 Query 42169 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 42228 ||| || || | || || ||||| || || || || || |||||||| | ||||| Sbjct 5444 TCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGT 5503 Query 42229 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 42288 || | ||| | || ||||| || ||| ||||| || | ||||| | || ||||| Sbjct 5504 GGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATAT 5563 Query 42289 GGACTACGG 42297 ||||||||| Sbjct 5564 GGACTACGG 5572 >seq213894 Length=28734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || || ||||| ||||| || ||||||| || || || | | | | Sbjct 8814 GTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAAGACC 8873 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | ||||||||||||||| | ||||| || || || || ||||| || ||||| ||||| | Sbjct 8874 CGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGCTTCAACTCGC 8933 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAG 123289 ||||| |||||||||| || || ||| | || ||||| ||| |||| Sbjct 8934 TGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 8982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536569837657960