Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq32733 149 3e-31 seq228004 120 1e-22 seq430283 86.0 3e-12 >seq32733 Length=979 Score = 149 bits (164), Expect = 3e-31 Identities = 213/296 (72%), Gaps = 13/296 (4%) Strand=Plus/Minus Query 66093 GCCGAGCTCGAAGGCGACATCGGGGAC-AG-TCACGTCGGCCTGCACGCGCGCCTCATGT 66150 ||||| |||||||||| || || ||| || | || |||||||| || ||||| ||| Sbjct 291 GCCGAAATCGAAGGCGAAATGGGTGACCAGCTGCCG--GGCCTGCAGGCCCGCCTGATGA 234 Query 66151 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 66210 |||||| |||||||||| ||||||| |||| || ||||||| ||| | ||| Sbjct 233 GCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCTGGTGGTCTTCA 174 Query 66211 TCAACCAGTTGCGCGAGAAGATCGGCAACGTG------GGCTACGGCCCGAACGAGACCA 66264 |||||||| ||||| |||||||||| || ||| | ||||| | | ||||| Sbjct 173 TCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCA 114 Query 66265 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66324 || |||||||| || ||| |||||||||||| || ||| |||| ||||||| |||| Sbjct 113 CC---GGCGGCAACGCACTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTATCG 57 Query 66325 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTC 66380 | | ||| | ||||| ||| ||||||||| ||| | | ||||||||| Sbjct 56 GCGCGATCAAGAAGGGCGACGAGATCATCGGCAACCAGACCAAGATCAAGGTCGTC 1 >seq228004 Length=3045 Score = 120 bits (132), Expect = 1e-22 Identities = 472/729 (65%), Gaps = 20/729 (3%) Strand=Plus/Plus Query 65810 GGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCA 65869 |||||| | || || |||||||| || || |||||||| || | || ||| ||| || Sbjct 313 GGGCCGTATCGTTGAGATCTACGGACCTGAGTCTTCAGGTAAAACCACGCTGACTCTGCA 372 Query 65870 CGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTC 65929 | | || ||| ||| ||| | | |||| ||||| || ||||| | Sbjct 373 GGTTATCGCATCTGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCCGAGCATGC 432 Query 65930 CCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT-TC 65988 || || || | ||||||||| ||||| || ||| | || ||||| | || | || Sbjct 433 GCTTGATCCGGTTTACGCCAAGAAACTCGGCGTAGACATTGATAACCTGCTC-TGCTCTC 491 Query 65989 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66048 |||| |||||||| |||||||| ||||| ||| ||| || | ||||| | Sbjct 492 AGCCAGACACTGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGGCGCGCTCTGGTGCCG 551 Query 66049 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 66108 | | | || |||| ||||| || ||||| ||| ||| || || ||||||| | Sbjct 552 TTGACGTGATCATCGTCGACTCCGTCGCGGCGCTGACGCCTAAAGCGGAAATCGAAGGTG 611 Query 66109 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 66168 | ||||| ||| ||| | ||||| || || | ||| ||||| ||||| || | Sbjct 612 AAATCGGTGACTCACACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAAC 671 Query 66169 TCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 66226 | |||| | | || |||| |||| || ||| | | | |||||||| | || Sbjct 672 TGGCCGGTAAC--CTGAAGCAGTCCAATACCCTGCTGATTTTCATCAACCAGATCCGTAT 729 Query 66227 GAAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 66284 ||| || || | || | || |||| || |||||||| || || || || || Sbjct 730 GAAAATTGGTGTGATGTTTGGTAA--CCCG---GAAACCACCACTGGTGGTAACGCGCTG 784 Query 66285 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 66344 | |||||||||||| ||||| | ||| |||| || |||| | || || |||||| Sbjct 785 AAGTTCTACGCCTCTGTCCGTCTTGATATCCGCCGTATCGGTGCAATCAAAGAGGGCGAT 844 Query 66345 GAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 66404 | | ||||||| ||||| || || || || || ||||| | ||| |||| | Sbjct 845 AACGTGGTCGGCAGTGAGACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCATTC 904 Query 66405 CGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC-TCGCGTGAGGTCGAACTCCT 66463 | || |||||| || ||||||| || || ||| | | ||| || || | Sbjct 905 AAACAGGCTGAGTTCCAGATCATGTACGGCGAAGGTATCAATACCTTTGGT-GAGCTGGT 963 Query 66464 CGACCTGGCCGTGTCGCAGGGCCTG-GTGAAGAAGTCGGGCGCCTGGTTCAAGTAC---G 66519 |||||||| |||| ||| ||| |||| ||| |||| || |||| || ||| | Sbjct 964 CGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAG-CGGGTGCATGGTACAGCTACAATG 1022 Query 66520 GGGACAAGA 66528 | ||||||| Sbjct 1023 GCGACAAGA 1031 >seq430283 Length=268 Score = 86.0 bits (94), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 65886 CAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTA- 65944 ||||||||||| |||| ||| || | |||||| || |||||| | || ||||| | ||| Sbjct 16 CAGAAGGCCGGCGGCACCGCGGCGTTCATCGATGCCGAGCACGCGCTCGACCCGGTGTAT 75 Query 65945 --CGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGC 66002 ||||| |||||| || || |||| | || || | |||||||| || ||| Sbjct 76 GCGGCCAA---GCTCGGCGTCAACGTCGAGGATCTGCTGCTCAGCCAGCCGGATACCGGC 132 Query 66003 GAGCAGGCCCTGGAGATCGTTGACCTCCTCGT 66034 |||||||| |||||||||| ||| | || || Sbjct 133 GAGCAGGCGCTGGAGATCGCCGACATGCTGGT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240947440073417