Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq159964 154 3e-33 seq275553 82.4 2e-11 >seq159964 Length=5345 Score = 154 bits (170), Expect = 3e-33 Identities = 631/984 (64%), Gaps = 33/984 (3%) Strand=Plus/Plus Query 12198 GTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCG 12257 ||| || || ||| | |||| ||| || | ||| | ||| | | || |||| || | Sbjct 57 GTCAAATACGCCGGAGCCGATGCCCGTCACGTCAACGCCCAGATAGGTGAAGTTGTAGTG 116 Query 12258 CTCGCACAGCTTCTCGATCTGCTTTGCCTGAT-GCGTGAACGACGTCCCCCGCCAGCTGT 12316 | ||||||| ||||||||||||||||| ||| ||| | | ||||||||| || Sbjct 117 TTTAAACAGCTTTTCGATCTGCTTTGCCTGCCAGCG-GAAATTCATTCCCCGCCAGTTGA 175 Query 12317 GCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACG 12376 | | ||| | |||||||| |||| | | | || || || |||| |||| ||| Sbjct 176 ACACCCGCAGCACGCGGAACTTTTCGCCGTCATGCTGTGGTGGCGCGACGATAACGAACG 235 Query 12377 TCGCGTCGTCGCGGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACG 12436 | | ||| | | || |||||| | ||| ||| |||||||| ||| |||| | Sbjct 236 TTGACAGGTCCCCTGAGCGGGCCGGGTCAAAACCGCCCCACACCGGGCGATTGCCGAAGG 295 Query 12437 GCCGCGG-GCTGTCCGGGTCGTAGTCGGTCCATAGGCC--CAAGTCGGAATAGCAGCGCT 12493 | || | ||| |||||||| | ||| ||| ||| || ||| ||| || Sbjct 296 GGCGGAGCGCT-TCCGGGTCATGGTCCTGCCAC--GCCGACACATCGACGGCGCATACCT 352 Query 12494 CCAGGTCGGCCAAGGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGC- 12552 |||| ||| || ||| | | | ||||||| | |||| |||||| | ||| Sbjct 353 CCAGATCGCTGAACTTGAACACCGAATTTTTGCTGTCAACGAACACGCACATATAGAGCA 412 Query 12553 TGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAG 12612 |||| | | | || ||| ||| | ||| || | | | ||||| || Sbjct 413 TGTTGAACGTG-TCAGCGTTATACCGGTTCCTCAGTTTATCGATGCTGGCGAGGTTAAAG 471 Query 12613 CCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAAC 12672 ||||| ||| ||||||| || || ||||| | |||||||| || || || |||| | Sbjct 472 CCGCCCTTGATCGCGTCTTCAAGGGTAATGACGTAACGCCACTGGCCATCTGGACACAGC 531 Query 12673 GCGCCGGCGTGGATCTGCGCTTCGCTGGGCCACGGCCCGGCCTTCTTTCCGCGCTTGCTG 12732 ||| ||| | | ||||||| ||| || || | ||||| || Sbjct 532 CGCCCGCCGTCACGCAG---TTCGCTGAATTTCGGGAAGGTGGTCGCCGCACGCTTTTTG 588 Query 12733 TTGCGGA------ACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTG 12786 ||| || |||| || ||||||||| ||||||| |||||||| ||| || Sbjct 589 CTGCCGAGCTTCCACTCTTCCCCGGTCCAGAACGGATAGGCCTGGTGGGTTTTGGCCGAT 648 Query 12787 GGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTC 12846 |||||||| ||||| || |||||| || | |||| |||||| ||||||||||| Sbjct 649 GGCGTGGAAAAGTACGTGGTGCGCCATTTATCGTGCGTGGCCATGGCGCTGGCCACTTCG 708 Query 12847 TGCAGCTTCTGGAAA-TTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTA 12905 | ||| || ||| || || | |||||| ||| ||| ||| | || ||| ||| Sbjct 709 TTCAG-GCGTGCAAAGTTCGGCACCCAGAAATATTCATCGCAGTACAGATGCCCGCTGTA 767 Query 12906 GCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTC 12965 | |||||| ||||| |||| || || || || ||||||||||| | | Sbjct 768 GGACTGCGCGGTGTTTTTGTTAGTGGACAGGAAGCGCAGTTCCGCAC------------C 815 Query 12966 TTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAAGGC 13025 ||||||| ||| ||||| || | |||| ||| | || | ||| | |||| | Sbjct 816 GTTGCTCAGCCGGATAGGATTACCCGTCAGCGTGATGCCAAAATACTGCTCCGCGATGTT 875 Query 13026 GACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTT 13085 || ||||| ||||||||| || | ||| || ||||| || || |||||||| Sbjct 876 CACAATGTACGAGCGGAACACCTCCGCCTGCGCCTTACTCGCAGAAAGAAAAATCTGCGG 935 Query 13086 GTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGAT 13145 ||| || ||||| || || | | |||||||| || || || |||| ||||| Sbjct 936 GTCGCCCGTCAGTACGGCATTCTCAAACGCTTCAAACGCAAAATACCAGGTGGCACCGAT 995 Query 13146 CTGGCGCGACTTCAGGATATGGCG 13169 |||||| || ||||| | ||| Sbjct 996 CTGGCGGCTTTTGAGGATGTTGCG 1019 >seq275553 Length=1540 Score = 82.4 bits (90), Expect = 2e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19615 GTAGAGGCCTTCGGCTGCAAGCTGAAGGTTTCCAGCCTGCTGGATATCGACCCCAAGGGC 19674 || ||||| ||||||||||||||| | | || | | |||||| |||| ||||||||| Sbjct 676 GTGGAGGCGTTCGGCTGCAAGCTGGTGCTGAGCAACGTTCTGGATCTCGATCCCAAGGGC 735 Query 19675 GGCAGCAAGACCACCCACAAGGTGCCCTTCGACGTCACCAGCCCCGACTTCATCCGCATC 19734 ||| | || |||||||| | | | ||| ||| || | ||| || |||| Sbjct 736 GGCGCTATCACTACCCACAAAATTAAATACTTCGTGACCGATCCGAAGTTCGTCAACATC 795 Query 19735 AACGGCGTGCCGTATCTGGA 19754 |||||||||||||||||||| Sbjct 796 AACGGCGTGCCGTATCTGGA 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103698383995598