Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq79071 206 3e-48 seq222524 183 3e-41 seq65234 163 3e-35 seq209331 131 2e-25 seq1462 123 3e-23 seq213894 120 3e-22 seq260686 95.1 1e-14 >seq79071 Length=852 Score = 206 bits (228), Expect = 3e-48 Identities = 156/184 (85%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 9561 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 9620 ||| | ||| || ||||||||||| | || |||||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 9621 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 9680 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 9681 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 9740 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 9741 TTCA 9744 |||| Sbjct 361 TTCA 364 >seq222524 Length=8439 Score = 183 bits (202), Expect = 3e-41 Identities = 146/176 (83%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 9568 CTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 9627 || || ||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 4032 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 4091 Query 9628 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 9687 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 4092 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 4151 Query 9688 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 9743 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 4152 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq65234 Length=1614 Score = 163 bits (180), Expect = 3e-35 Identities = 307/450 (68%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 88492 CATCAAATCATTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 88551 ||| || | ||| | ||| || ||||||| | |||||| | | |||||||| | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 88552 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 88611 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 88612 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 88671 ||| || || || || | || |||||| || ||||| ||||| ||||| | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 88672 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 88731 ||| ||||||||||| || |||||| | |||| || | | || | ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 88732 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAAT 88791 || ||||| |||| ||||||| || ||||| || |||| || | ||| | ||||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 88792 TGAAGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGC---CTCAATAACAACGCA 88848 || | || | ||| ||||| |||| ||| | |||| ||||| | || || Sbjct 949 TGCACTAGTTGTAGCATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACACACA 1005 Query 88849 TGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 88908 |||||||| || |||||||| || | || | |||||| || || || | || || Sbjct 1006 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATAT 1065 Query 88909 CTGTCGAGTAGATACTGCTTCATAAAAACG 88938 | ||| || | ||| | |||||| || Sbjct 1066 TTTAAAAGTGGAAATTGCATTATAAAAGCG 1095 >seq209331 Length=9407 Score = 131 bits (144), Expect = 2e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 9574 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 9633 || ||||| || | || || || |||||||||| |||||| ||||||||||| || Sbjct 316 GTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGACC 375 Query 9634 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 9693 || |||||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 376 GCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTCC 435 Query 9694 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 9743 ||| ||||||| || |||||||||||| ||||| ||||| ||||| Sbjct 436 AGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTC 485 >seq1462 Length=4781 Score = 123 bits (136), Expect = 3e-23 Identities = 287/433 (66%), Gaps = 0/433 (0%) Strand=Plus/Minus Query 88507 TTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 88566 ||| ||||| ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 88567 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 88626 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 1371 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 1312 Query 88627 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 88686 || | || || || || || ||||| || || ||||| || ||||| | || || || Sbjct 1311 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 1252 Query 88687 AACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACC 88746 | ||| ||||| ||||||| | || ||| |||||||| || Sbjct 1251 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 1192 Query 88747 AACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAATTGAAGCAGAAGCCTT 88806 | | || ||||| || || ||||||| || | || | ||| || | | ||||| Sbjct 1191 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 1132 Query 88807 ATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGTCGAGT 88866 |||||||| | ||| ||| || ||| |||| |||||||| || || || ||||| Sbjct 1131 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 1072 Query 88867 TGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGC 88926 || || || |||||||| || || || || || ||||| | || || || || Sbjct 1071 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 1012 Query 88927 TTCATAAAAACGA 88939 |||||||| ||| Sbjct 1011 ATCATAAAAGCGA 999 >seq213894 Length=28734 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 9561 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 9620 ||||| |||| || |||||||| | ||| || || |||||||||| |||||| || Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 9621 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 9680 ||| ||||| || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 9681 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 9740 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 9741 TTCA 9744 |||| Sbjct 8809 TTCA 8806 >seq260686 Length=13603 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 88502 TTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 88561 ||||| || ||||| || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 5584 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 5525 Query 88562 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 88621 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 5524 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 5465 Query 88622 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 88681 ||||| || | || ||||| || || || || || || ||||| || || || | || Sbjct 5464 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 5405 Query 88682 GGAAT 88686 ||||| Sbjct 5404 GGAAT 5400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542545116207600