Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq155894 260 2e-64 seq495623 224 1e-53 seq63939 206 4e-48 seq206465 174 2e-38 seq494847 172 8e-38 seq2677 132 7e-26 seq93888 118 2e-21 >seq155894 Length=1395 Score = 260 bits (288), Expect = 2e-64 Identities = 395/555 (71%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 88180 AAGCAACTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCC 88239 || || || |||||| | || || |||||||| |||||||| |||| || |||| Sbjct 647 AAACAGCTGATCTTCGCAACCGGTGAAGCCGGGTGCGGTAAAACCTGGATCAGTGCCGCA 588 Query 88240 TACGCGGTAGAGC----GATTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCC 88295 | |||| ||| ||||| | || || |||| | || || || || ||||| Sbjct 587 AAAGCGGCTGAGGCCCTGATTAAT----AAGGATATCGACAGGATTATCGTTACGCGCCC 532 Query 88296 TGTCCTCTCCGCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGC 88355 || || |||||||| || | || ||||| || |||||| || ||| || ||||| Sbjct 531 GGTACTGCAGGCAGATGAGGATCTGGGATTCCTTCCCGGCGATATTTCTGAGAAATTCGC 472 Query 88356 GCCTTACTTCCGACCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGC--CGTTTCTTA 88413 |||||| ||||| || ||||| || | || | |||||||| ||| || | ||| | Sbjct 471 GCCTTATTTCCGCCCGGTTTATGACATTCTGGTTAAACGTCTTGGC-GCATCCTTTATG- 414 Query 88414 CAATACTGCCTGAAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGT 88473 ||||| || ||| |||| || | |||||| ||||| || || ||||||||||||||| Sbjct 413 CAATATTGTCTGCGTCCGGAAATTGCCAAGGTAGAGATTGCACCGTTCGCCTATATGCGT 354 Query 88474 GGCCGCAACTTCGAGAACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGCTCAG 88533 || |||| |||||| || || || || || | || || || |||||| ||| || | Sbjct 353 GGTCGCACCTTCGAAAATGCTGTGGTAATTCTGGACGAGGCGCAGAACGTCACCGCCGCG 294 Query 88534 CAGATGAAGCTCTTCCTGACCCGTATCGGGGAGAACTGTATCGTT-ATCGTTAACGGTGA 88592 |||||||| | ||||||||||| | || || || ||| || | || |||||||| || Sbjct 293 CAGATGAAAATGTTCCTGACCCGACTGGGCGAAAA-TGTCACGGTCATTGTTAACGGCGA 235 Query 88593 CGTCACTCAGTGCGACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGCATTAGCCCG 88652 | || ||||||||||| || | |||||| || || || || ||||| | || || Sbjct 234 TATTACCCAGTGCGACTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCTGGCGCG 175 Query 88653 TTTCGAAGAAGACGAATTAGTCGGCATCGTTCGTTTTACGAAAGATGACTGTGTGCGCTC 88712 ||||||||| ||||| | || ||||| || || || ||||| || |||||||| || Sbjct 174 TTTCGAAGAGGACGAGATGGTTGGCATTGTACGCTTCGGCAAAGAAGATTGTGTGCGTTC 115 Query 88713 TCCGCTTTGTCAGCG 88727 | |||| |||||||| Sbjct 114 TGCGCTGTGTCAGCG 100 >seq495623 Length=1190 Score = 224 bits (248), Expect = 1e-53 Identities = 385/558 (69%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 88174 GAAACCAAGCAACTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCC 88233 |||||||||||||| |||||| | || || ||||| || || ||||| |||| || | Sbjct 635 GAAACCAAGCAACTGATCTTCGCTACGGGCGAAGCAGGTTGTGGTAAAACCTGGATCAGC 576 Query 88234 ACCGCCTACGCGGTAGAGC----GATTACTGGCCAAAGACGTCGATCGTATCATTGTCAC 88289 |||| | |||| ||| |||| | || || || || | || || || || Sbjct 575 GCCGCAAAAGCGGCCGAGGCCCTGATTCAT----AAGGATGTTGACAGGATTATAGTGAC 520 Query 88290 TCGCCCTGTCCTCTCCGCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAA 88349 |||||| || || || ||||| || || || ||||| || || ||| | ||||| Sbjct 519 TCGCCCGGTACTTCAGGCGGATGAGGATTTGGGATTCCTTCCAGGGGATATCTCAGAAAA 460 Query 88350 GTTCGCGCCTTACTTCCGACCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGCCGTTT 88409 ||||| || || ||||| || || || || || || | |||||||| ||| || Sbjct 459 ATTCGCCCCGTATTTCCGGCCGGTATATGACGTTCTGGTTAAACGTCTTGGCTCTTCCTT 400 Query 88410 CTTACAATACTGCCTGAAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATAT 88469 | || ||||||||| || | || | ||| || || || || || || |||||||| Sbjct 399 TATGCAGTACTGCCTGCGTCCCGAAATTGGCAAAGTGGAAATCGCGCCGTTTGCCTATAT 340 Query 88470 GCGTGGCCGCAACTTCGAGAACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGC 88529 ||| ||||||| || || ||||| || || || | ||||| || |||||| ||| || Sbjct 339 GCGAGGCCGCACGTTTGAAAACGCCGTGGTGATTCTGGATGAGGCGCAGAACGTCACCGC 280 Query 88530 TCAGCAGATGAAGCTCTTCCTGACCCGTATCGGGGAGAACTGTATCGTTATCGTTAACGG 88589 || |||||| | |||||||| || | ||||| ||| | ||| || |||||||| Sbjct 279 CGCCCAAATGAAGATGTTCCTGACGCGCCTTGGGGAAAACGTGACCGTCATTGTTAACGG 220 Query 88590 TGACGTCACTCAGTGCGACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGCATTAGC 88649 || |||| ||||| || ||||| ||| || |||| || ||||| ||||| | | Sbjct 219 CGATATCACCCAGTGTGATTTACCGTCCCATGTTCAGTCCGGCCTGGCTGACGCGCTGTC 160 Query 88650 CCGTTTCGAAGAAGACGAATTAGTCGGCATCGTTCGTTTTACGAAAGATGACTGTGTGCG 88709 || ||| | || ||||| | || || | || ||||| ||||| ||||| ||||| Sbjct 159 GCGCTTCCAGGACGACGAGATGGTGAGCGTGGTCCGTTTCGGAAAAGAGGACTGCGTGCG 100 Query 88710 CTCTCCGCTTTGTCAGCG 88727 |||| ||| |||||||| Sbjct 99 TTCTCAGCTCTGTCAGCG 82 >seq63939 Length=2243 Score = 206 bits (228), Expect = 4e-48 Identities = 228/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 99138 GAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCGTGCCGA 99197 ||| || ||| ||||||||| ||||||||| | || || ||||||| ||| | Sbjct 1892 GAGGAAAAATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGGCACGCCAA 1951 Query 99198 AGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATC 99257 | |||||||| || |||||||| || || ||||| || ||||||||||||||||| | Sbjct 1952 AAGCTGACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACC 2011 Query 99258 TGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACG 99317 |||| || || ||||||||||| || || ||| ||||| || || ||||||||||| | Sbjct 2012 TGCAGGATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATG 2071 Query 99318 AACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAA 99377 | ||||||||||| ||||||||||||||||| || ||| | || || || || Sbjct 2072 AGCTGCTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCT 2131 Query 99378 CTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGT 99437 | || ||||| || ||| | | | ||||||| ||||| ||||| || || ||||||| Sbjct 2132 CCATCTGGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGT 2191 Query 99438 GGCG 99441 |||| Sbjct 2192 GGCG 2195 >seq206465 Length=5074 Score = 174 bits (192), Expect = 2e-38 Identities = 316/457 (69%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 88189 ATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCCTACGCGGTA 88248 || ||| | ||||| ||||| || || ||||| || | || ||||| | || | | Sbjct 1224 ATTTTCGCTACAGGCGAAGCGGGGTGTGGTAAAACTTGGATCAGTACCGCTAAAGCCGCA 1165 Query 88249 GAGCGATTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCCTGTCCTCTCCGCA 88308 || ||| | |||||| | || || |||||||| |||||||| || | || Sbjct 1164 GAAGCCTTAATTAACAAAGATATTGAGCGGATCATTGTGACTCGCCCAGTGTTACAAGCC 1105 Query 88309 GATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGCGCCTTACTTCCGA 88368 ||||||||||| || ||||| || ||||| || |||||| || || ||||||||||| Sbjct 1104 GATGAAGACTTGGGTTTCCTCCCTGGCGACATTTCTGAAAAATTTGCTCCTTACTTCCGC 1045 Query 88369 CCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGCCGTTTCTTACAATACTGCCTGAAA 88428 || || || || || | | ||||| |||| | ||| | || ||||| | Sbjct 1044 CCGGTCTATGACGTATTAGTTAAACGCTTGGGGTCCTCTTTTATGCACTACTGTTTACGC 985 Query 88429 CCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGTGGCCGCAACTTCGAG 88488 || | || | || ||||| || || || ||||| |||||||| ||| | | ||| ||| Sbjct 984 CCTGAAATTGCGAAAGTTGAAATTGCACCTTTCGCTTATATGCGGGGCAGAACCTTTGAG 925 Query 88489 AACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGC-TCAGCAGATGAAGCTCTT 88547 || || ||||||| | |||||||| |||||| || || ||| || ||||| | || Sbjct 924 AATGCTTTCGTTATTCTTGATGAAGCGCAGAACGTTACCGCCTCA-CAAATGAAAATGTT 866 Query 88548 CCTGACCCGTATCGGGGAGAACTGT-ATCGTTATCGTTAACGGTGACGTCACTCAGTGCG 88606 ||| || || | |||||||| ||| | ||| |||||||||||||| | || || || | Sbjct 865 CCTCACTCGCTTAGGGGAGAA-TGTGACCGTGATCGTTAACGGTGATATTACCCAATGTG 807 Query 88607 ACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGC 88643 || |||| | || || || || || || || || || Sbjct 806 ACCTACCAGCAGGTGTTAAATCCGGGCTTGCTGATGC 770 >seq494847 Length=1062 Score = 172 bits (190), Expect = 8e-38 Identities = 225/307 (73%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 99138 GAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAAT-GAGCGAAGGCGTGCCG 99196 ||| || ||| ||||||||| | |||||| | ||| | |||| | ||| ||| Sbjct 771 GAGGAAAAATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGC-AGGGCACGCCC 713 Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 || || ||||| || |||||||| || ||||| ||||| || || ||||||||||||||| Sbjct 712 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 653 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCAC 99316 ||||| || || ||||||||||| || || ||| || || |||| || || ||||| Sbjct 652 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 593 Query 99317 GAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAAT--GGTG 99374 || |||||||||||||| || || || || || || || | || || ||| |||| Sbjct 592 GAGCTGCTGTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTG 533 Query 99375 TAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAAC 99434 | | || |||||||| ||| | || | || |||||||| ||||| || || |||| Sbjct 532 T--CGATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAAC 475 Query 99435 AGTGGCG 99441 ||||||| Sbjct 474 AGTGGCG 468 Score = 147 bits (162), Expect = 3e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 99839 GTTCCTGACCGTCAGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGG 99898 ||| | ||| | || | || || || || ||||| ||| | |||| | ||| | || Sbjct 304 GTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGC 245 Query 99899 GTGCCGTTTAATATTGCGTCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAAC 99958 ||||||| ||||| || ||||||||| || | || ||| | || |||||| || Sbjct 244 CTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGAC 185 Query 99959 ATGACCGTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTG 100018 || ||||||||||| |||||| | ||||| || |||||||||| ||||| ||| Sbjct 184 CTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTG 125 Query 100019 GAACAAACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAA 100078 || || || || ||| | || | ||||| | | || |||||||||||||| Sbjct 124 GAGCAGACGCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAG 65 Query 100079 CGTAAGCCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGAC 100138 || ||||| || || |||||||| ||| ||||| |||||||| | ||||| |||||| Sbjct 64 CGCAAGCCGGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGAC 5 Query 100139 CCGC 100142 |||| Sbjct 4 CCGC 1 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 99569 CAGATCGACCAAATCTCCAAGGCCATGGACCAGTTGAAAAACGACCCGGATAACCGTCGT 99628 ||||||||||| | ||||| | || ||| |||||| ||||||||| || || Sbjct 442 CAGATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGC 383 Query 99629 ATCATCGTGTCGGCATGGAACGTAGCTGACCTCGACGAAATGGCTTTAGCACCGTGCCAC 99688 |||||||| || ||||||||||| | || || || || ||||| | || ||||||||| Sbjct 382 ATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCAC 323 Query 99689 GCATTCTTCCAGTTCTAC 99706 || ||||||||||||||| Sbjct 322 GCGTTCTTCCAGTTCTAC 305 >seq2677 Length=2322 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||| || ||||| ||| | || |||||||| ||||| ||||| ||| |||||||| Sbjct 2094 GACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCAA 2153 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACTG 99322 | ||||| || | || || || || || || |||| |||||||||||||| ||| Sbjct 2154 CAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCTG 2213 Query 99323 CTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTATT 99382 |||||||| | || || || |||||| || || |||| || || ||||| ||| Sbjct 2214 CTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGATT 2273 Query 99383 TGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGT 99430 ||||| |||||| || | | ||| || | || ||||| || ||| Sbjct 2274 TGGGATGAATGGGCAGACGAGCAGGGCAACTTAGGTCCGGTTTATGGT 2321 >seq93888 Length=1140 Score = 118 bits (130), Expect = 2e-21 Identities = 215/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 99860 TGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCGTCA 99919 || ||||| ||||| ||| ||||| || ||||| | || |||||||| || Sbjct 120 TGCCAGCTCTATCAGCGCTCTTGTGATGTCTTTTTAGGCTTACCCTTTAATATCGCCAGC 179 Query 99920 TACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTCGTC 99979 || || | || |||| ||| | || |||||| | | | || || ||||| || Sbjct 180 TATGCGCTACTGGTCCATATGGTCGCTCAGCAGTGTGATCTCGAAGTCGGCGATTTTGTT 239 Query 99980 TGGTCTGGTGGTGA--CGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCAGT 100037 ||| | || || || || || ||| | | ||| || | |||||| | | || | Sbjct 240 TGGACAGGGGGCGATACGCACCTCTATTC--TAATCACTTAGAACAAGCGCACTTACAAT 297 Query 100038 TAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCATCT 100097 || |||||| || ||| | | |||||| || | || ||||| ||||| ||||| || | Sbjct 298 TAAGTCGTGAGCCTCGTGCACTGCCTAAGTTGGTCATTAAACGCAAGCCGGACTCTATTT 357 Query 100098 TCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAAAG 100157 |||| || ||||| || ||||| | ||||||||||| ||||| ||||| ||||||| Sbjct 358 TCGATTACTGTTTTGATGATTTCGAGATAGAAGGCTACGATCCGCACCCTGCGATCAAAG 417 Query 100158 CACCGGTCGCGAT 100170 | || |||||||| Sbjct 418 CGCCCGTCGCGAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711993076568200