Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq494847 159 5e-34 seq63939 140 5e-28 seq2677 129 9e-25 seq367800 113 7e-20 seq435381 87.8 3e-12 seq423883 86.0 1e-11 >seq494847 Length=1062 Score = 159 bits (176), Expect = 5e-34 Identities = 205/283 (72%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || || || ||||||||||| | |||| ||||| | ||| ||||||| || ||| Sbjct 289 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 230 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAG 203409 ||| || ||||| ||| | ||| | || |||||| | || ||| | | || Sbjct 229 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 170 Query 203410 TTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTG 203469 || |||||||| || || ||||| |||||||| |||||| ||||||||| | || ||| Sbjct 169 TTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTG 110 Query 203470 CAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCT 203529 ||| | || || || |||| | | | ||| |||| |||| || ||||| |||||| Sbjct 109 CAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTCT 50 Query 203530 ATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACG 203572 ||||||||||| | || || ||||| || |||||||| |||| Sbjct 49 ATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACG 7 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 || || ||||| ||||| |||||||||| || | || || |||||||| || | Sbjct 712 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 653 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| || || || || ||||| ||||| || ||| || | || ||||||||||| Sbjct 652 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 593 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||||||||||||||||| || || ||||| |||||| |||||||| || || ||| Sbjct 592 GAGCTGCTGTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTG 533 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||| ||||| Sbjct 532 TCGATCTGGGACGAGTGGGC 513 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 202954 GGCGAACTCGGCCCAGTATACGGAAAACAGTGGCGGGATTGGGTTGGTGCAGATGGTCGG 203013 || || ||||| || || || || ||||||||||| |||| | || ||||| || Sbjct 502 GGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCGCAGCTGGGGGGCAGCGGATGGGCGC 443 Query 203014 CATCATGACCAAATCACCAAAGTCATCGACCAGCTGCGTAACGATCCGGATAACCGCCGC 203073 || ||||| | | ||| || |||| |||||| | ||| ||||| |||||| Sbjct 442 CAGATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGC 383 Query 203074 ATTATTGTCAGCGCATGGAATGTCGGTGAGTTGGACCAGATGGCGTTAGCACCGTGTCAT 203133 || || || |||||||| ||||| || |||| |||||||| | || ||||| || Sbjct 382 ATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCAC 323 Query 203134 TCTTTCTTCCAGTTCTA 203150 | |||||||||||||| Sbjct 322 GCGTTCTTCCAGTTCTA 306 >seq63939 Length=2243 Score = 140 bits (154), Expect = 5e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||||||||| |||| || | || || ||||||||| || ||||| Sbjct 1957 GACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAG 2016 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || || || || ||||| ||||| || || ||| |||| || || ||||| |||||| Sbjct 2017 GATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTG 2076 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||| |||||||| || ||||||||| |||| || || || ||| ||| | ||| Sbjct 2077 CTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATC 2136 Query 202729 TGGGACGAATGGGCG 202743 ||||| || |||||| Sbjct 2137 TGGGATGAGTGGGCG 2151 >seq2677 Length=2322 Score = 129 bits (142), Expect = 9e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| |||||||| ||| | ||||| ||| ||||| || || ||| Sbjct 2094 GACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTGCAA 2153 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | |||||||| | || ||||||||||| || || || || || |||||||||||| Sbjct 2154 CAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAGCTG 2213 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||| | || || |||||||| ||| |||||| || || ||| ||| || || Sbjct 2214 CTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACGATT 2273 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 2274 TGGGATGAATGGGC 2287 >seq367800 Length=224 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 || || |||||||||||||||||| | ||||||| |||||||| || || ||| | Sbjct 87 GATCGCACCGGCACCGGCACGCGCAGCGTGTTCGGTTGGCAGATGCGCTTCGATCTGGCG 146 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || ||||| | || ||||| || ||| | ||||| || || ||||| ||||||||| Sbjct 147 CAGGGTTTCCCCATCGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 206 Query 202669 CTGTGGTTCCTGAAAGG 202685 |||||||||||||| || Sbjct 207 CTGTGGTTCCTGAAGGG 223 >seq435381 Length=275 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 203293 TCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCC 203352 || |||||||||||||||||||| |||||| | ||||| || || |||||||| || || Sbjct 62 TCTTGTCAGTTGTATCAGCGCAGTGCCGATATTTTCTTGGGTGTCCCGTTTAATATTGCA 121 Query 203353 TCGTATGCTTTACTGACTGAGATGGTTGCTCAG 203385 || || ||||| || ||| |||||| || ||| Sbjct 122 TCCTACGCTTTGCTAACTATGATGGTGGCGCAG 154 >seq423883 Length=261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314 || ||| ||| |||||||| |||| | |||||||||||||||| || ||| | |||||| Sbjct 175 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCGG 234 Query 2315 TGGTTCGAGTCCACCACACGCCACCAG 2341 |||||||| |||||| | | ||||||| Sbjct 235 TGGTTCGAATCCACCTCCCTCCACCAG 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783400676266000