Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq79071 201 1e-46 seq222524 178 1e-39 seq65234 147 2e-30 seq209331 136 4e-27 seq213894 125 8e-24 seq260686 91.5 2e-13 >seq79071 Length=852 Score = 201 bits (222), Expect = 1e-46 Identities = 155/184 (84%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 126778 TTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGA 126837 ||| | ||| || ||||||||||| | || || ||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 126838 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 126897 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 126898 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 126957 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 126958 TTCA 126961 |||| Sbjct 361 TTCA 364 >seq222524 Length=8439 Score = 178 bits (196), Expect = 1e-39 Identities = 145/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 126785 CTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 126844 || || ||||||||||| | || || || ||||||||||| || |||| ||||||||| Sbjct 4032 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 4091 Query 126845 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 126904 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 4092 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 4151 Query 126905 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 126960 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 4152 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq65234 Length=1614 Score = 147 bits (162), Expect = 2e-30 Identities = 306/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 38189 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 38248 ||| || | ||| | ||| ||| ||||||| | |||||| | | |||||||| | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 38249 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 38308 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 38309 AGTAGCAGCGCCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATG 38368 ||| || || || || | || ||| || || ||||| || || ||||| || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 38369 TTTCCAAAAAGGAATAACACCAGGATGGCATACATCACCCATGCCAATCTCAGAACCTTC 38428 ||| ||||||||||| || | ||| || | || || | | || | ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 38429 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 38488 || ||||| |||| ||||||| || ||||| || |||| ||| | ||||| ||||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 38489 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGAATCACCTGC---CTCAATAACAAC 38542 || || | ||| ||| ||||| || | ||| | |||| ||||| | || Sbjct 949 TGCACTAGTTGTAGC---ATTAATAGAGTT---TAAATTATCTGCACATTCAATTAACAC 1002 Query 38543 ACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 38602 ||| |||||||| || ||||| || || | || | |||||| || || || | || Sbjct 1003 ACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 1062 Query 38603 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 38635 || | ||| || | ||| | |||||| || Sbjct 1063 TATTTTAAAAGTGGAAATTGCATTATAAAAGCG 1095 >seq209331 Length=9407 Score = 136 bits (150), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126791 GTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 126850 || ||||| || | || ||||| |||||||||| |||||| ||||||||||| || Sbjct 316 GTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGACC 375 Query 126851 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 126910 || |||||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 376 GCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTCC 435 Query 126911 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 126960 ||| ||||||| || |||||||||||| ||||| ||||| ||||| Sbjct 436 AGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTC 485 >seq213894 Length=28734 Score = 125 bits (138), Expect = 8e-24 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 126778 TTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGA 126837 ||||| |||| || |||||||| | ||| ||||| |||||||||| |||||| || Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 126838 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 126897 ||| ||||| || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 126898 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 126957 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 126958 TTCA 126961 |||| Sbjct 8809 TTCA 8806 >seq260686 Length=13603 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 38199 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 38258 ||||| || || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 5584 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 5525 Query 38259 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 38318 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 5524 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 5465 Query 38319 CCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATGTTTCCAAAAA 38378 ||||| || | |||||||| || || || || || || | ||| || || || | || Sbjct 5464 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 5405 Query 38379 GGAAT 38383 ||||| Sbjct 5404 GGAAT 5400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537275804575480