Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq209331 167 2e-36 seq213894 161 1e-34 seq222524 127 2e-24 seq79071 123 3e-23 seq366053 116 4e-21 seq255299 116 4e-21 seq102074 116 4e-21 seq70204 109 6e-19 seq15764 82.4 8e-11 >seq209331 Length=9407 Score = 167 bits (184), Expect = 2e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 52705 AACTACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGG 52764 || |||| | || ||| || || || | ||| ||||| |||| |||||||| ||||| Sbjct 301 AATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGT 360 Query 52765 GAGTTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGG 52824 ||||||||||| || || ||||| ||||| || || |||| ||| || ||||| || Sbjct 361 GAGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGA 420 Query 52825 TCTTCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCG 52884 | ||||||||| || |||| ||||||||| ||||| ||||||||||| |||||||||||| Sbjct 421 TGTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCG 480 Query 52885 CCTTCGA 52891 ||||||| Sbjct 481 CCTTCGA 487 >seq213894 Length=28734 Score = 161 bits (178), Expect = 1e-34 Identities = 147/183 (80%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 52708 TACATAGCT-TCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGA 52766 ||||| ||| | ||| || ||||| | || ||||| |||| |||||||| ||||| || Sbjct 8988 TACAT-GCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 52767 GTTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTC 52826 ||| ||||| || ||||| || || || || || || ||||| || |||||| ||||| Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 52827 TTCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCC 52886 |||||||||||| |||| ||||||||| ||||| ||||| ||||| ||||||||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 52887 TTC 52889 ||| Sbjct 8809 TTC 8807 >seq222524 Length=8439 Score = 127 bits (140), Expect = 2e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 ||||||||| ||||| | ||| || |||||||| |||||| |||| |||||||| || Sbjct 4034 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 4093 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 || |||||||| ||||| || || |||| ||| || ||||| |||| | || ||| Sbjct 4094 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 4153 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || || | ||||||| ||| ||||| |||||||| ||||||||||| || || || Sbjct 4154 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCACGCG 4213 >seq79071 Length=852 Score = 123 bits (136), Expect = 3e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 ||||||||| ||||| | |||||| || ||||| || || ||||| |||||||| || Sbjct 190 TTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACG 249 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 || ||||| || |||||||||||||||| ||| || || ||| ||| | || | || Sbjct 250 CACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGC 309 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || || | |||| ||| || ||||| |||||||| ||||| || ||||| ||||| Sbjct 310 ATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACACG 369 Query 52896 AGGCTGAACTGCGATATCAAC 52916 |||| | ||| ||||| Sbjct 370 TACCTGAGGTTTGATTTCAAC 390 >seq366053 Length=223 Score = 116 bits (128), Expect = 4e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 223 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 164 Query 66463 AGCTGAGCTAAGAGTGCAT 66481 | |||||||||| | |||| Sbjct 163 AACTGAGCTAAGGGCGCAT 145 >seq255299 Length=12406 Score = 116 bits (128), Expect = 4e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3294 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 3353 Query 66463 AGCTGAGCTAAGAGTGCAT 66481 | |||||||||| | |||| Sbjct 3354 AACTGAGCTAAGGGCGCAT 3372 >seq102074 Length=1593 Score = 116 bits (128), Expect = 4e-21 Identities = 64/64 (100%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 66412 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCT 66471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCT 1072 Query 66472 AAGA 66475 |||| Sbjct 1071 AAGA 1068 >seq70204 Length=1350 Score = 109 bits (120), Expect = 6e-19 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 66400 AAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 66459 |||||| || ||||| ||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 927 AAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTA 986 Query 66460 TCCAGCTGAGCTAAGAGTGCATTAATTT 66487 |||| |||||||||| | || | |||| Sbjct 987 TCCAACTGAGCTAAGGGCGCCCTGATTT 1014 >seq15764 Length=1899 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/202 (71%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 137284 TCGTAAACG---TTCCGCATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAAT 137340 |||| |||| || || || || || || |||||||| || ||||| || || ||| Sbjct 944 TCGTTAACGATATTACGGATGATGTGGGTGTAAGAACGGGAGTGAATCGTCTCTGAGAAC 885 Query 137341 GTCCATGTTTGAACCCATGTTTCAAAGCC-GACATCAGAGATCAACGGC-GCAAATGCCA 137398 | ||| |||| || ||| ||||| | | | ||| ||||||| |||| ||| || Sbjct 884 GCCCAGGTTTCAATCCAGGTTTCCAGTTCAGGAATC-GAGATCAGCGGCAGCA---GCGC 829 Query 137399 GA-GCTGGAGCT-CGTCCTTGAATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGT 137456 || | | | ||| || || ||||||||||| ||||| ||||||||||| | ||| | | Sbjct 828 GACGTTCGGGCTGCGGCCCTGAATAGAATCCAGCAGCGTCTGATATTTCAGGTTGCTGAT 769 Query 137457 AAAAATACCCTTTTCATGTTCC 137478 ||||||| ||||| || ||| Sbjct 768 AAAAATATGTTTTTCGTGGTCC 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518857064096760