Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031022.1 Length=108050 Score E Sequences producing significant alignments: (Bits) Value seq79071 114 9e-21 seq213894 93.3 3e-14 seq209331 89.7 4e-13 >seq79071 Length=852 Score = 114 bits (126), Expect = 9e-21 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 55501 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAAACGTAC 55560 |||||| ||||| |||| |||||| ||| || ||| | ||||||| ||||||||| || Sbjct 193 AGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGCAC 252 Query 55561 AGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC 55620 || || ||||||||||||||||| | || || || |||||||||||||| |||||| Sbjct 253 GGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 312 Query 55621 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCCCTC 55671 ||| || |||| | || ||||| || || ||||| || || || Sbjct 313 TTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTC 363 >seq213894 Length=28734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 55489 TTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGC 55548 |||||| |||||| || ||||| | || || || | ||| ||||| |||||| | Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 55549 GTTAAAACGTACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATG 55608 ||| || ||||| || || || || || || || ||||| || || |||||||| || | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 55609 TTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCC 55668 || | || |||| ||| ||||| | | ||| ||||| || ||||||||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 55669 CTCGAT 55674 || || Sbjct 8809 TTCAAT 8804 >seq209331 Length=9407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 55488 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 55547 |||||| | | ||| || || || |||| || || | ||| ||||| |||||||| Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 55548 CGTTAAAACGTACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGAT 55607 |||||| || || ||||| || ||||| || || || | || || ||||| || |||| Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 55608 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTC 55667 ||| | || |||| ||| ||||| | | || || || || ||||||||||| | Sbjct 422 GTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 481 Query 55668 CCTCGAT 55674 | ||||| Sbjct 482 CTTCGAT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343532266982191