Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq79071 111 1e-19 seq213894 102 6e-17 seq209331 86.0 4e-12 >seq79071 Length=852 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 110502 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAAC 110561 |||||| ||||| |||| |||||| ||| || ||| | ||||||| |||||| || || Sbjct 193 AGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGCAC 252 Query 110562 AGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTTCTGTGCATC 110621 || ||||| || ||||||||||| | || || || |||||||| ||||| |||||| Sbjct 253 GGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 312 Query 110622 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTC 110672 ||| || |||| | || ||||| || || ||||| |||||||| Sbjct 313 TTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTC 363 >seq213894 Length=28734 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 110490 TTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGC 110549 |||||| |||||| || ||||| | || || || | ||| ||||| |||||| | Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 110550 GTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTG 110609 ||| || || || || ||||| || || || || ||||| || || |||||||| |||| Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 110610 TTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACC 110669 || | || |||| ||| ||||| | | ||| ||||| || ||||||||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 110670 TTCGAT 110675 ||| || Sbjct 8809 TTCAAT 8804 >seq209331 Length=9407 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 110489 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 110548 |||||| | | ||| || || || |||| || || | ||| ||||| |||||||| Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 110549 CGTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGT 110608 |||||| || || ||||| || || || || || || | || || ||||| || || | Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 110609 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCAC 110668 ||| | || |||| ||| ||||| | | || || || || ||||||||||| | Sbjct 422 GTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 481 Query 110669 CTTCGAT 110675 ||||||| Sbjct 482 CTTCGAT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353948503979966