Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq155894 241 2e-58 seq206465 206 4e-48 seq63939 174 2e-38 seq494847 147 3e-30 seq105800 96.9 5e-15 >seq155894 Length=1395 Score = 241 bits (266), Expect = 2e-58 Identities = 419/605 (69%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 88096 CCTATTGAGGCCCGCAATGAAAACCAGCAGCAATACATGAATGCGCTGGAAACCAAACAA 88155 || ||||| ||||| |||||| ||| ||| || | || || | || | ||||| Sbjct 701 CCGATTGAAGCCCGTAATGAAGCTCAGGCGCACTATCTTAACGCCATAGAGAGAAAACAG 642 Query 88156 CTGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCT 88215 ||||| ||||| ||||||||||| |||||||||||||| | | | ||||| | || Sbjct 641 CTGATCTTCGCAACCGGTGAAGCCGGGTGCGGTAAAACCTGGATCAGTGCCGCAAAAGCG 582 Query 88216 GCCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCT 88275 || || || | || || | ||| | || || || || || || || || Sbjct 581 GCTGAGGCCCTGATTAATAAGGATATCGACAGGATTATCGTTACGCGCCCGGTACTGCAG 522 Query 88276 GCAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTC 88335 |||||||| || || || ||| | |||||||| | || ||||| ||||| ||||| ||| Sbjct 521 GCAGATGAGGATCTGGGATTCCTTCCCGGCGATATTTCTGAGAAATTCGCGCCTTATTTC 462 Query 88336 CGTCCTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTACGC--TACTGTT 88393 || || || || ||| | || ||||| | || | || ||| || || ||| Sbjct 461 CGCCCGGTTTATGACATTCTGGTTAAACGTCTTGGCG--CATCCTTTATGCAATATTGTC 404 Query 88394 TAAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCT 88453 | |||| ||||| ||||||||||||||| || |||||||| ||||| || || | || Sbjct 403 TGCGTCCGGAAATTGCCAAGGTAGAGATTGCACCGTTCGCCTATATGCGTGGTCGCACCT 344 Query 88454 TTGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTGCTCAGCAGATGAAGC 88513 | |||||||| || | | | || || || |||||| || || ||||||||| Sbjct 343 TCGAAAATGCTGTGGTAATTCTGGACGAGGCGCAGAACGTCACCGCCGCGCAGATGAAAA 284 Query 88514 TCTTCCTGACACGTATCGGGGAGAACTGTCTCG-TGATTGTCAATGGCGATATTACTCAG 88572 | |||||||| || | || || || |||| || | ||||| || ||||||||||| ||| Sbjct 283 TGTTCCTGACCCGACTGGGCGAAAA-TGTCACGGTCATTGTTAACGGCGATATTACCCAG 225 Query 88573 TGCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTTGACACT 88632 |||||||| || ||||| | ||| || || || || ||||| ||||||| || Sbjct 224 TGCGACTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCTGGCGCGTTTCGAAGAG 165 Query 88633 GACGACTTAGTTAGCGTTATTCACTTTGTGAAAGACGACTGTGTACGCTCCGAGCTTTGT 88692 ||||| | ||| || || | | ||| | ||||| || ||||| || || | ||| ||| Sbjct 164 GACGAGATGGTTGGCATTGTACGCTTCGGCAAAGAAGATTGTGTGCGTTCTGCGCTGTGT 105 Query 88693 CAACG 88697 || || Sbjct 104 CAGCG 100 >seq206465 Length=5074 Score = 206 bits (228), Expect = 4e-48 Identities = 377/545 (69%), Gaps = 8/545 (1%) Strand=Plus/Minus Query 88157 TGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCTG 88216 |||| ||||| || || ||||| ||||| |||||||| | | | |||| | || | Sbjct 1226 TGATTTTCGCTACAGGCGAAGCGGGGTGTGGTAAAACTTGGATCAGTACCGCTAAAGCCG 1167 Query 88217 CCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCTG 88276 | ||| || | ||||| |||| || |||||||| || || ||||| | | Sbjct 1166 CAGAAGCCTTAATTAACAAAGATATTGAGCGGATCATTGTGACTCGCCCAGTGTTACAAG 1107 Query 88277 CAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTCC 88336 | ||||||||| | || ||| | || |||||| | || || || || || |||||||||| Sbjct 1106 CCGATGAAGACTTGGGTTTCCTCCCTGGCGACATTTCTGAAAAATTTGCTCCTTACTTCC 1047 Query 88337 GTCCTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTA--CGCTACTGTTT 88394 | || ||||| ||||| || |||||||| | |||| | ||| | ||||||||| Sbjct 1046 GCCCGGTCTATGACGTATTAGTTAAACGCTT--GGGGTCCTCTTTTATGCACTACTGTTT 989 Query 88395 AAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCTT 88454 | || | ||||| || || || ||||| || ||||| || ||||| || | | ||| Sbjct 988 ACGCCCTGAAATTGCGAAAGTTGAAATTGCACCTTTCGCTTATATGCGGGGCAGAACCTT 929 Query 88455 TGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTG-CTCAGCAGATGAAGC 88513 ||| ||||| || || | | |||||||| |||||| ||| | |||| || ||||| Sbjct 928 TGAGAATGCTTTCGTTATTCTTGATGAAGCGCAGAACGTTACCGCCTCA-CAAATGAAAA 870 Query 88514 TCTTCCTGACACGTATCGGGGAGAACTGT-CTCGTGATTGTCAATGGCGATATTACTCAG 88572 | ||||| || || | |||||||| ||| |||||| || || || |||||||| || Sbjct 869 TGTTCCTCACTCGCTTAGGGGAGAA-TGTGACCGTGATCGTTAACGGTGATATTACCCAA 811 Query 88573 TGCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTTGACACT 88632 || ||| |||| ||| || || ||||| || |||||| | ||||||| | Sbjct 810 TGTGACCTACCAGCAGGTGTTAAATCCGGGCTTGCTGATGCGATGCAGCGTTTTTCTGAT 751 Query 88633 GACGACTTAGTTAGCGTTATTCACTTTGTGAAAGACGACTGTGTACGCTCCGAGCTTTGT 88692 || || | || | || | | ||||| || |||||||| ||||| || || ||| Sbjct 750 GATGATGTTGTCGGGGTGGTACGCTTTGGTGCTGAAGACTGTGTTCGCTCAGAACTCTGT 691 Query 88693 CAACG 88697 ||||| Sbjct 690 CAACG 686 >seq63939 Length=2243 Score = 174 bits (192), Expect = 2e-38 Identities = 216/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGAC 99527 |||||||| ||| |||| |||||| | || | | |||||| |||| ||| Sbjct 1900 ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGGCACGCCAAAAGCTGAC 1959 Query 99528 CGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAA 99587 ||||| ||||| |||||| | || | ||||| || || |||||||| || || || Sbjct 1960 CGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCTGCAGGAT 2019 Query 99588 GGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCTT 99647 |||||||| |||||||| || ||| ||||| |||| || ||||||||||| || || Sbjct 2020 GGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGAGCTGCTG 2079 Query 99648 TGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTGG 99707 ||||| |||||||| |||||||| | | || || ||||| ||| |||| | |||||| Sbjct 2080 TGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTCCATCTGG 2139 Query 99708 AATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 ||||||||| | ||||| || || | || ||||| || || || |||||||| Sbjct 2140 GATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTGGCG 2195 >seq494847 Length=1062 Score = 147 bits (162), Expect = 3e-30 Identities = 207/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || ||||| ||||| || || || | || | ||| | || |||||||||||||| Sbjct 289 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 230 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || |||||| ||||||| || ||| | || || || | || ||| ||||| || Sbjct 229 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 170 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT 100346 || |||||||| ||||| || |||||||| |||||| ||||| ||||| || Sbjct 169 TTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTG 110 Query 100347 CAGCTAGGACGCACT--CCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACT 100404 ||||| ||||| | |||||| | | || || || ||||||| || ||||| || | Sbjct 109 CAGCT--GACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGT 52 Query 100405 CTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCC 100453 |||||||||||||| ||||| ||||||||||| || | ||||| || Sbjct 51 CTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCC 3 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 99908 CAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCATTATTGTCAGTGCATG 99967 |||||| | || ||| |||||| |||||| || || ||||| || || |||||| Sbjct 425 CAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATG 366 Query 99968 GAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGCGTTCTTCCAGTTCTA 100027 |||||| | ||| || || || ||||| | || || ||||| ||||||||||||||||| Sbjct 365 GAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTA 306 Query 100028 C 100028 | Sbjct 305 C 305 >seq105800 Length=3879 Score = 96.9 bits (106), Expect = 5e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584 || ||||| ||||| || ||| | | ||||| |||||||||||||| || || Sbjct 2663 GATCGTACGGGCACAGGCACGCGCAGTGTATTTGGCTATCAAATGCGTTTTGATCTGAAA 2722 Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTC 99644 | || ||||| ||||||| || || | || | || || ||||| |||||||| Sbjct 2723 GCTGGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCATGAACTA 2782 Query 99645 CTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704 | |||||| | ||||| || || || | | || ||||||| || || || | || Sbjct 2783 ATCTGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGTTAGCATT 2842 Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764 ||| |||| |||| | || ||||| | ||||| ||||| || || || ||||| Sbjct 2843 TGGGATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGGCTCACAATGGCGC 2902 Query 99765 TCTTGGCC 99772 |||||||| Sbjct 2903 TCTTGGCC 2910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729693130004760