Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq79071 163 3e-35 seq222524 150 2e-31 seq65234 143 3e-29 seq1462 125 8e-24 seq260686 104 3e-17 seq213894 104 3e-17 seq209331 104 3e-17 >seq79071 Length=852 Score = 163 bits (180), Expect = 3e-35 Identities = 128/153 (84%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 62569 CTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACC 62628 |||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 333 CTGCGTCGCGAAACGCTGGAAGATGCAGTTAAACATCCTGAAAACTATCCGCAGCTGACT 274 Query 62629 ATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGAC 62688 |||||||| || || ||||| || || |||||||| ||||| || || |||||||||||| Sbjct 273 ATCCGTGTTTCAGGCTATGCCGTGCGTTTTAACTCACTGACGCCTGAGCAGCAGCGCGAC 214 Query 62689 GTTATCGCTCGTACCTTCACCGAGAGTTTGTAA 62721 || || | |||||||| || || ||| | ||| Sbjct 213 GTAATTACCCGTACCTTTACTGAAAGTCTTTAA 181 >seq222524 Length=8439 Score = 150 bits (166), Expect = 2e-31 Identities = 121/146 (83%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 62569 CTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACC 62628 ||| | |||||||| |||||||| || || ||||| ||||| |||||||||||||||||| Sbjct 4177 CTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAGCACCCGGAGAAATATCCGCAGCTGACC 4118 Query 62629 ATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGAC 62688 || || || ||||||||||| || || ||||||||| |||| || ||||||||||| ||| Sbjct 4117 ATTCGCGTTTCCGGTTATGCCGTGCGTTTTAACTCTTTGACGCCAGAACAGCAGCGTGAC 4058 Query 62689 GTTATCGCTCGTACCTTCACCGAGAG 62714 || || | |||||||| || || || Sbjct 4057 GTGATTACGCGTACCTTTACTGAAAG 4032 >seq65234 Length=1614 Score = 143 bits (158), Expect = 3e-29 Identities = 300/447 (67%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 || |||||| | ||| | || ||| | || || | || || || |||||| | || Sbjct 1095 CGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGA 1036 Query 152024 TGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCTG 152083 | || || ||||| || || ||||| || || | ||||| | |||| | Sbjct 1035 GTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTA 976 Query 152084 AAGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAATATATCTCCAAACGAGCTGGAATC 152143 || ||||| ||| | || | ||||||| ||||| | || ||||||| ||||| Sbjct 975 AACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATA 916 Query 152144 GGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACGC 152203 |||||||||| |||| ||||| || ||| | || | | || |||| | Sbjct 915 GGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTT 856 Query 152204 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACAG 152263 ||||| || ||||||||||| ||||| || || | || || ||||| || || || Sbjct 855 CATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAA 796 Query 152264 GGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 152323 |||||| || | || || || || |||| || ||| || || |||||| | ||| ||||| Sbjct 795 GGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAA 736 Query 152324 AATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGAT 152383 ||| | | ||||| |||||||| | ||| | |||||||| | | |||||| | ||| Sbjct 735 AATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGAT 676 Query 152384 TATAGTGTTCAGCTGAATGATTTGATG 152410 ||| ||| || | ||| | || ||| Sbjct 675 TATGCTGTACAAATTAATAAATTAATG 649 >seq1462 Length=4781 Score = 125 bits (138), Expect = 8e-24 Identities = 283/423 (67%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 || |||||||| || || || || | ||||| || || || || || |||||||| Sbjct 1000 CGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGGG 1059 Query 152024 TGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCTG 152083 || || || ||||| || ||||| |||||||| |||| ||| || ||| ||| Sbjct 1060 GTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATA-GCTT 1118 Query 152084 A-AGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAATATATCTCCAAACGAGCTGGAAT 152142 | | |||||||| ||||| | | || ||| |||| | || |||| || || || Sbjct 1119 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 1178 Query 152143 CGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACG 152202 ||| || || | ||| |||||||| ||| || | ||||||| Sbjct 1179 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 1238 Query 152203 CCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACA 152262 |||||| ||| ||| || || | ||||| || ||||| || || ||||| ||||| || Sbjct 1239 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 1298 Query 152263 GGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGA 152322 || || | || || || || || || | ||| ||||| ||||| |||||| |||| Sbjct 1299 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 1358 Query 152323 AAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGA 152382 || | | || ||||||||||| || || |||| ||||| ||||||| | || Sbjct 1359 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 1418 Query 152383 TTA 152385 ||| Sbjct 1419 TTA 1421 >seq260686 Length=13603 Score = 104 bits (114), Expect = 3e-17 Identities = 272/413 (66%), Gaps = 8/413 (2%) Strand=Plus/Plus Query 151992 AGATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTT 152051 ||||||| |||| || || |||||| | || || || || || || |||||||| | Sbjct 5176 AGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCT 5235 Query 152052 CATGCGTTGTTATTGAGGCAGGAGATTCGCTGAAGTCTATCAATAAGGC----TTCTGCT 152107 | ||||| | |||||| || || || | || || ||| || | | || Sbjct 5236 CCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCAT---TAACGCCACCTCCAGCG 5292 Query 152108 TCAATTGTTGAATATATCTCCAAACGAGCTGGAATCGGCATTAACGTTGGTATGATTCGT 152167 | ||||| | || | || | || || || ||||||||||||| ||| || ||| Sbjct 5293 -CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGT 5351 Query 152168 GCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGG 152227 || || ||| || ||||||| | ||| || || ||||| || | Sbjct 5352 GCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTAT 5411 Query 152228 AAACATTTTCAGACTGCTGTTAAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCT 152287 || || || ||||| || || || || ||||| ||||| || | || ||||| || || Sbjct 5412 AAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCG 5471 Query 152288 ACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAAC 152347 || | || || || |||||| ||||||| |||| || || || |||| || ||| Sbjct 5472 ACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAAC 5531 Query 152348 AAAGGCGTAGAAGAAAACCGCATCCGTCATATGGATTATAGTGTTCAGCTGAA 152400 ||||| |||| |||||| | ||||||||||| || | || |||||||| Sbjct 5532 CGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAA 5584 >seq213894 Length=28734 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 62605 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 62664 |||||||||||||||||| | ||||| || || || || ||||| || ||||| ||||| Sbjct 8873 CCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGCTTCAACTCG 8932 Query 62665 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTGTAA 62721 |||||| |||||||||| || || ||| | ||||||||||| |||| ||||| Sbjct 8933 CTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAGCATGTAA 8989 >seq209331 Length=9407 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 62602 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 62661 ||||| || |||||||||||||||||||| || || |||||||| || || ||||||||| Sbjct 422 CATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTTAAC 363 Query 62662 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 62708 || |||||| |||||||||| || || || | || |||||||| Sbjct 362 TCACTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCAC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542926719946800